Os01g0617700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to CENP-C (Fragment).
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Os01g0617700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to CENP-C (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59.49 | 0.362 | 8.11 | 2.24 | 0.647 | -1.51 | -0.474 | -3.98 | 0.493 | 0.198 | 22.66 | 7450 | -- | -- |
| 64.92 | 0.375 | 8.24 | 1.96 | 0.633 | -0.492 | -0.477 | -- | 0.412 | 0.0779 | 33.05 | 6874 | -- | -- |
| 60.36 | 0.362 | 8.11 | 2.25 | 0.63 | -1.54 | -- | -4.1 | 0.497 | 0.143 | 22.5 | 7667 | -- | -- |
| 65.81 | 0.378 | 8.24 | 2 | 0.64 | -0.482 | -- | -- | 0.422 | 0.178 | 61.15 | 6563 | -- | -- |
| 85.97 | 0.432 | 8.09 | 2.12 | -- | -1.8 | -- | -4.36 | 0.473 | -- | 22.37 | 8118 | -- | -- |
| 68.79 | 0.389 | 8.21 | 2.22 | 0.661 | -- | -0.451 | -- | 0.536 | 0.222 | -- | -- | -- | -- |
| 69.66 | 0.391 | 8.21 | 2.24 | 0.663 | -- | -- | -- | 0.539 | 0.174 | -- | -- | -- | -- |
| 89.03 | 0.439 | 8.23 | 2.01 | -- | -0.637 | -- | -- | 0.418 | -- | 86.75 | 2433 | -- | -- |
| 79.12 | 0.414 | 8.39 | -- | 0.628 | -1.78 | -- | -- | -0.242 | 0.138 | 51.93 | 47520 | -- | -- |
| 97.29 | 0.461 | 8.2 | 2.26 | -- | -- | -- | -- | 0.549 | -- | -- | -- | -- | -- |
| 201.61 | 0.664 | 8.27 | -- | 0.694 | -- | -- | -- | 0.29 | 0.35 | -- | -- | -- | -- |
| 103.92 | 0.475 | 8.38 | -- | -- | -1.82 | -- | -- | -0.246 | -- | 54.7 | 47520 | -- | -- |
| 231.88 | 0.711 | 8.26 | -- | -- | -- | -- | -- | 0.298 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 55.62 | wind | 1 | 43200 | < th | dose independent | rect. | 22 | 8 |
| 2 | 55.75 | wind | 1 | 43200 | < th | dose independent | rect. | 17 | 13 |
| 3 | 55.81 | wind | 1 | 43200 | < th | dose independent | rect. | 20 | 10 |
| 7 | 55.95 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 2 |
| 10 | 56.11 | wind | 1 | 43200 | < th | dose independent | rect. | 17 | 16 |
| 20 | 56.37 | wind | 1 | 43200 | < th | dose dependent | rect. | 22 | 9 |
| 26 | 56.43 | wind | 1 | 43200 | < th | dose dependent | rect. | 17 | 15 |
| 31 | 56.59 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 2 |
| 32 | 56.60 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 7 |
| 38 | 56.67 | wind | 1 | 43200 | > th | dose independent | rect. | 22 | 8 |
| 51 | 56.87 | wind | 1 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 52 | 56.88 | wind | 1 | 43200 | > th | dose independent | rect. | 18 | 14 |
| 54 | 56.93 | wind | 1 | 43200 | < th | dose independent | sin | 11 | NA |
| 61 | 57.04 | wind | 1 | 43200 | > th | dose independent | rect. | 20 | 10 |
| 64 | 57.04 | wind | 1 | 43200 | < th | dose dependent | rect. | 20 | 12 |
| 78 | 57.22 | wind | 1 | 43200 | > th | dose independent | rect. | 20 | 12 |
| 99 | 57.38 | temperature | 20 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 104 | 57.43 | temperature | 20 | 14400 | < th | dose dependent | rect. | 5 | 19 |
| 106 | 57.45 | radiation | 40 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 123 | 57.45 | radiation | 40 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 143 | 57.51 | humidity | 70 | 43200 | < th | dose independent | rect. | 1 | 7 |
| 162 | 57.60 | temperature | 20 | 14400 | < th | dose dependent | rect. | 8 | 17 |
| 165 | 57.61 | temperature | 20 | 14400 | < th | dose dependent | sin | 18 | NA |
| 166 | 57.61 | temperature | 20 | 14400 | < th | dose dependent | sin | 23 | NA |
| 167 | 57.61 | temperature | 20 | 14400 | < th | dose dependent | rect. | 15 | 10 |
| 179 | 57.64 | humidity | 70 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 186 | 57.66 | temperature | 20 | 43200 | < th | dose independent | rect. | 15 | 3 |
| 207 | 57.72 | wind | 1 | 43200 | < th | dose dependent | sin | 10 | NA |
| 218 | 57.75 | temperature | 20 | 43200 | > th | dose independent | rect. | 14 | 4 |
| 227 | 57.78 | temperature | 20 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 230 | 57.79 | wind | 5 | 4320 | > th | dose independent | rect. | 21 | 12 |
| 236 | 57.80 | radiation | 1 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 237 | 57.80 | radiation | 1 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 238 | 57.80 | temperature | 20 | 43200 | > th | dose independent | rect. | 15 | 2 |
| 241 | 57.80 | humidity | 70 | 43200 | > th | dose independent | rect. | 2 | 5 |
| 243 | 57.80 | radiation | 1 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 244 | 57.80 | temperature | 20 | 14400 | < th | dose dependent | rect. | 22 | 2 |
| 262 | 57.84 | temperature | 20 | 14400 | < th | dose dependent | rect. | 6 | 4 |
| 276 | 57.88 | wind | 5 | 4320 | < th | dose independent | rect. | 21 | 12 |
| 303 | 57.94 | temperature | 20 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 364 | 58.10 | temperature | 20 | 43200 | > th | dose independent | rect. | 11 | 7 |
| 366 | 58.10 | temperature | 20 | 14400 | < th | dose dependent | no | NA | NA |
| 378 | 58.11 | temperature | 20 | 14400 | < th | dose dependent | rect. | 13 | 23 |
| 389 | 58.13 | temperature | 20 | 43200 | > th | dose independent | rect. | 8 | 10 |
| 404 | 58.14 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 23 | 9 |
| 425 | 58.16 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 23 | 9 |
| 434 | 58.16 | temperature | 20 | 14400 | < th | dose dependent | rect. | 21 | 23 |
| 436 | 58.17 | temperature | 20 | 43200 | < th | dose independent | rect. | 8 | 10 |
| 454 | 58.18 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 1 | 7 |
| 503 | 58.22 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 519 | 58.24 | wind | 5 | 4320 | > th | dose dependent | rect. | 21 | 13 |
| 542 | 58.27 | temperature | 20 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 685 | 58.44 | wind | 7 | 4320 | > th | dose dependent | rect. | 7 | 3 |
| 698 | 58.45 | wind | 5 | 4320 | > th | dose dependent | rect. | 21 | 8 |
| 725 | 58.48 | wind | 5 | 4320 | < th | dose independent | rect. | 22 | 5 |
| 726 | 58.48 | temperature | 20 | 43200 | > th | dose independent | rect. | 7 | 5 |
| 735 | 58.49 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 7 |
| 764 | 58.52 | temperature | 20 | 43200 | < th | dose independent | rect. | 7 | 5 |
| 801 | 58.55 | humidity | 60 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 843 | 58.59 | wind | 5 | 4320 | > th | dose independent | rect. | 22 | 2 |
| 851 | 58.59 | radiation | 40 | 43200 | < th | dose independent | rect. | 16 | 15 |
| 857 | 58.60 | temperature | 20 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 902 | 58.65 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 903 | 58.65 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 905 | 58.65 | radiation | 40 | 43200 | < th | dose independent | rect. | 16 | 4 |
| 910 | 58.65 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 9 |
| 912 | 58.66 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 924 | 58.66 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 21 | 4 |
| 932 | 58.66 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 955 | 58.67 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 12 | NA |