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Os01g0617500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tetratricopeptide-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.5 (0.0129) R2 : 0.00782
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0515 (0.0272) R2dN8 : 0.0101 R2N8 : 0.00782
σ : 0.243
deviance : 27.08
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
13.34 0.172 11.5 0.471 0.434 0.219 -0.237 -0.411 0.115 15.5 24.3 557 -- --
13.78 0.173 11.5 0.338 0.44 0.165 -0.265 -- 0.0564 14.8 23.2 414 -- --
13.49 0.171 11.5 0.469 0.423 0.221 -- -0.407 0.113 15.6 24.3 599 -- --
13.87 0.173 11.5 0.337 0.432 0.218 -- -- 0.0785 15.5 24.3 598 -- --
21.01 0.214 11.5 0.525 -- 0.318 -- -0.588 0.142 -- 24.6 1027 -- --
15.52 0.185 11.5 0.258 0.415 -- -0.216 -- -0.0135 14.8 -- -- -- --
15.68 0.185 11.5 0.253 0.415 -- -- -- -0.0147 14.9 -- -- -- --
21.58 0.216 11.5 0.345 -- 0.316 -- -- 0.0948 -- 24.6 1036 -- --
16.43 0.189 11.5 -- 0.419 0.136 -- -- 0.00984 15.3 24.2 544 -- --
25.62 0.237 11.5 0.235 -- -- -- -- -0.0254 -- -- -- -- --
17.37 0.195 11.5 -- 0.41 -- -- -- -0.0429 14.9 -- -- -- --
24.45 0.23 11.5 -- -- 0.264 -- -- 0.0352 -- 24.9 1096 -- --
27.08 0.243 11.5 -- -- -- -- -- -0.0515 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 12.16 temperature 10.0 270 > th dose dependent rect. 10 21
2 12.24 temperature 10.0 270 > th dose dependent rect. 11 19
7 12.38 temperature 10.0 10 > th dose dependent rect. 13 19
8 12.40 temperature 15.0 270 > th dose independent rect. 12 17
13 12.43 atmosphere 1015.0 270 < th dose dependent rect. 10 9
15 12.45 atmosphere 995.0 90 > th dose dependent rect. 8 18
19 12.47 atmosphere 995.0 10 > th dose dependent rect. 8 19
29 12.53 temperature 15.0 270 > th dose independent rect. 10 21
38 12.57 temperature 10.0 270 > th dose dependent rect. 23 8
51 12.62 atmosphere 995.0 270 > th dose dependent rect. 5 19
60 12.67 temperature 15.0 10 > th dose independent rect. 13 19
67 12.70 radiation 10.0 270 < th dose independent rect. 23 9
95 12.78 radiation 10.0 270 < th dose dependent rect. 23 9
100 12.80 temperature 15.0 270 > th dose independent rect. 10 10
119 12.83 atmosphere 1015.0 270 < th dose dependent rect. 11 18
126 12.85 radiation 40.0 270 < th dose independent rect. 12 17
138 12.87 temperature 10.0 10 > th dose dependent rect. 15 17
141 12.89 temperature 15.0 270 > th dose independent rect. 23 8
142 12.89 atmosphere 1010.0 270 < th dose independent rect. 10 10
147 12.90 radiation 10.0 10 < th dose independent rect. 3 7
151 12.90 wind 9.0 270 < th dose independent rect. 20 14
152 12.90 temperature 10.0 270 > th dose independent rect. 20 14
153 12.90 humidity 50.0 270 > th dose independent rect. 20 14
154 12.90 atmosphere 995.0 270 > th dose independent rect. 20 14
167 12.92 wind 1.0 90 > th dose independent rect. 8 18
171 12.92 temperature 10.0 270 > th dose dependent rect. 10 10
192 12.94 atmosphere 1010.0 270 < th dose independent rect. 23 8
194 12.94 atmosphere 1010.0 270 < th dose independent rect. 11 18
203 12.95 wind 9.0 270 < th dose independent rect. 10 10
206 12.95 precipitation 0.1 270 < th dose independent rect. 10 10
207 12.95 precipitation 0.1 270 < th dose independent rect. 20 14
209 12.95 precipitation 0.1 270 < th dose dependent rect. 10 10
210 12.95 precipitation 0.1 270 < th dose dependent rect. 20 14
221 12.97 temperature 10.0 270 > th dose independent rect. 5 7
222 12.97 atmosphere 995.0 270 > th dose independent rect. 5 7
223 12.97 atmosphere 1015.0 270 < th dose independent rect. 5 7
224 12.97 precipitation 0.1 270 < th dose independent rect. 5 7
228 12.97 precipitation 0.1 270 < th dose dependent rect. 5 7
251 12.99 temperature 10.0 90 > th dose dependent rect. 2 6
264 13.00 wind 1.0 270 > th dose independent rect. 7 16
270 13.01 radiation 10.0 90 < th dose independent rect. 2 8
285 13.01 atmosphere 1015.0 30 < th dose dependent rect. 13 19
288 13.02 wind 9.0 270 < th dose independent rect. 5 7
290 13.02 precipitation 0.1 270 < th dose independent rect. 12 17
298 13.02 precipitation 0.1 270 < th dose dependent rect. 12 17
304 13.03 wind 5.0 90 < th dose independent rect. 2 6
310 13.03 atmosphere 995.0 270 > th dose dependent rect. 7 3
320 13.04 wind 5.0 270 < th dose independent rect. 24 6
322 13.04 humidity 50.0 270 > th dose independent rect. 5 7
323 13.04 wind 9.0 270 < th dose independent rect. 12 17
324 13.04 temperature 10.0 270 > th dose dependent rect. 1 4
336 13.05 atmosphere 995.0 90 > th dose independent rect. 8 18
339 13.05 atmosphere 1015.0 10 < th dose dependent rect. 12 10
342 13.05 temperature 30.0 10 < th dose dependent rect. 8 19
345 13.06 precipitation 0.1 270 < th dose independent rect. 7 3
349 13.06 precipitation 0.1 270 < th dose dependent rect. 7 3
363 13.07 wind 9.0 270 < th dose independent rect. 7 3
364 13.07 temperature 10.0 270 > th dose independent rect. 7 3
365 13.07 humidity 50.0 270 > th dose independent rect. 7 3
366 13.07 atmosphere 995.0 270 > th dose independent rect. 7 3
367 13.07 atmosphere 1015.0 270 < th dose independent rect. 7 3
369 13.07 radiation 20.0 90 < th dose independent rect. 2 6
372 13.07 wind 7.0 270 < th dose independent rect. 23 8
380 13.07 radiation 10.0 270 < th dose dependent sin 7 NA
382 13.07 radiation 40.0 90 < th dose dependent rect. 2 6
385 13.07 radiation 10.0 270 < th dose dependent rect. 24 13
391 13.08 temperature 10.0 90 > th dose independent rect. 2 6
393 13.08 temperature 30.0 90 < th dose independent rect. 2 6
394 13.08 humidity 50.0 90 > th dose independent rect. 2 6
396 13.08 atmosphere 995.0 90 > th dose independent rect. 2 6
397 13.08 atmosphere 1015.0 90 < th dose independent rect. 2 6
399 13.08 precipitation 0.1 90 < th dose independent rect. 2 6
402 13.08 humidity 70.0 270 > th dose independent rect. 23 8
403 13.08 temperature 15.0 10 > th dose independent rect. 15 17
404 13.08 temperature 10.0 90 > th dose independent rect. 8 18
407 13.08 precipitation 0.1 90 < th dose dependent rect. 2 6
425 13.09 temperature 10.0 10 > th dose dependent rect. 2 6
428 13.09 temperature 10.0 10 > th dose dependent rect. 13 9
438 13.10 radiation 10.0 10 < th dose independent sin 4 NA
446 13.10 temperature 30.0 270 < th dose independent rect. 20 14
457 13.10 atmosphere 995.0 270 > th dose dependent rect. 5 7
471 13.11 wind 5.0 270 < th dose independent rect. 1 4
479 13.11 temperature 30.0 270 < th dose independent rect. 23 8
480 13.11 humidity 50.0 270 > th dose independent rect. 23 8
482 13.11 atmosphere 995.0 270 > th dose independent rect. 23 8
488 13.11 temperature 10.0 270 > th dose independent rect. 7 16
489 13.11 atmosphere 995.0 10 > th dose independent rect. 8 18
492 13.11 wind 9.0 270 < th dose independent rect. 10 21
493 13.11 precipitation 0.1 270 < th dose independent rect. 10 21
506 13.11 precipitation 0.1 270 < th dose dependent rect. 10 21
508 13.12 radiation 1.0 10 > th dose independent rect. 8 5
511 13.12 temperature 30.0 270 < th dose independent rect. 24 6
513 13.12 humidity 50.0 270 > th dose independent rect. 24 6
516 13.12 atmosphere 995.0 270 > th dose independent rect. 24 6
539 13.12 radiation 40.0 10 < th dose independent rect. 12 20
541 13.12 atmosphere 995.0 270 > th dose dependent rect. 6 5
556 13.13 radiation 40.0 10 < th dose independent rect. 2 6
557 13.13 precipitation 0.1 270 < th dose independent rect. 24 6
559 13.13 precipitation 0.1 270 < th dose independent rect. 23 8
574 13.13 precipitation 0.1 270 < th dose dependent rect. 24 6
577 13.13 precipitation 0.1 270 < th dose dependent rect. 23 8
591 13.14 wind 1.0 270 > th dose independent rect. 1 4
593 13.14 wind 1.0 90 > th dose independent rect. 8 5
595 13.14 wind 7.0 10 < th dose independent rect. 2 6
597 13.14 temperature 10.0 10 > th dose independent rect. 2 6
599 13.14 temperature 30.0 10 < th dose independent rect. 2 6
600 13.14 humidity 50.0 10 > th dose independent rect. 2 6
602 13.14 atmosphere 995.0 10 > th dose independent rect. 2 6
603 13.14 atmosphere 1015.0 10 < th dose independent rect. 2 6
605 13.14 wind 1.0 270 > th dose independent rect. 10 10
606 13.14 precipitation 0.1 270 < th dose independent rect. 7 16
609 13.14 wind 9.0 270 < th dose independent rect. 6 18
610 13.14 temperature 10.0 10 > th dose independent rect. 8 18
612 13.14 precipitation 0.1 90 < th dose independent rect. 8 18
625 13.14 precipitation 0.1 270 < th dose dependent rect. 7 16
630 13.14 precipitation 0.1 90 < th dose dependent rect. 8 18
650 13.15 atmosphere 995.0 10 > th dose dependent rect. 8 5
656 13.15 radiation 40.0 10 < th dose dependent rect. 3 13
672 13.16 wind 1.0 270 > th dose independent rect. 24 6
675 13.16 radiation 1.0 90 > th dose independent rect. 7 6
682 13.16 wind 9.0 270 < th dose independent rect. 7 16
685 13.16 precipitation 0.1 10 < th dose independent rect. 13 19
698 13.16 precipitation 0.1 10 < th dose dependent rect. 13 19
703 13.17 temperature 10.0 270 > th dose independent rect. 1 4
705 13.17 temperature 30.0 270 < th dose independent rect. 1 4
706 13.17 humidity 50.0 270 > th dose independent rect. 1 4
709 13.17 atmosphere 995.0 270 > th dose independent rect. 1 4
710 13.17 atmosphere 1010.0 270 < th dose independent rect. 1 4
712 13.17 radiation 1.0 270 < th dose independent rect. 1 4
728 13.17 wind 9.0 90 < th dose independent rect. 8 18
729 13.17 atmosphere 995.0 270 > th dose independent rect. 6 18
732 13.17 temperature 10.0 270 > th dose independent rect. 5 20
733 13.17 radiation 1.0 270 < th dose dependent rect. 1 4
754 13.18 wind 1.0 270 > th dose independent rect. 7 3
755 13.18 radiation 1.0 270 > th dose independent rect. 7 3
761 13.18 temperature 10.0 10 > th dose independent rect. 8 5
767 13.18 atmosphere 995.0 10 > th dose independent rect. 8 5
769 13.18 atmosphere 1015.0 10 < th dose independent rect. 8 5
771 13.18 precipitation 0.1 10 < th dose independent rect. 8 5
782 13.18 precipitation 0.1 10 < th dose independent rect. 2 6
792 13.18 precipitation 0.1 10 < th dose dependent rect. 8 5
794 13.18 precipitation 0.1 10 < th dose dependent rect. 2 6
804 13.19 wind 1.0 270 > th dose independent rect. 3 1
805 13.19 precipitation 0.1 270 < th dose independent rect. 1 4
826 13.19 wind 9.0 10 < th dose independent rect. 13 19
827 13.19 wind 9.0 270 < th dose independent rect. 5 20
829 13.19 precipitation 0.1 270 < th dose dependent rect. 1 4
844 13.19 temperature 30.0 270 < th dose dependent rect. 5 20
887 13.21 wind 9.0 1440 < th dose independent rect. 3 6
888 13.21 temperature 10.0 1440 > th dose independent rect. 3 6
891 13.21 humidity 50.0 1440 > th dose independent rect. 3 6
893 13.21 atmosphere 995.0 1440 > th dose independent rect. 3 6
905 13.21 temperature 10.0 1440 > th dose independent rect. 9 18
913 13.21 radiation 40.0 10 < th dose dependent sin 5 NA
914 13.21 radiation 40.0 90 < th dose dependent sin 6 NA
916 13.21 radiation 40.0 10 < th dose dependent rect. 3 5
919 13.21 wind 9.0 90 < th dose dependent rect. 2 6
933 13.22 temperature 30.0 270 < th dose independent rect. 7 3
957 13.22 precipitation 0.1 270 < th dose independent rect. 5 20
974 13.22 precipitation 0.1 270 < th dose dependent rect. 5 20
979 13.23 temperature 10.0 1440 > th dose independent rect. 9 5
988 13.23 atmosphere 995.0 1440 > th dose independent rect. 9 5
999 13.23 atmosphere 1015.0 1440 < th dose independent rect. 3 6