Os01g0616800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pentatricopeptide repeat containing protein.
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Os01g0616800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pentatricopeptide repeat containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 95.97 | 0.46 | 7.87 | 0.65 | 0.523 | -0.495 | 0.295 | -1.11 | -0.184 | 13.2 | 998.6 | 11872 | -- | -- |
| 96.7 | 0.458 | 7.84 | 0.67 | 0.537 | -0.634 | 0.275 | -- | -0.154 | 13 | 998.6 | 11649 | -- | -- |
| 95.79 | 0.456 | 7.87 | 0.651 | 0.52 | -0.499 | -- | -1.11 | -0.18 | 13.1 | 997.6 | 11914 | -- | -- |
| 96.51 | 0.458 | 7.84 | 0.726 | 0.538 | -0.694 | -- | -- | -0.166 | 13.1 | 997.6 | 11806 | -- | -- |
| 112.72 | 0.494 | 7.88 | 0.638 | -- | -0.471 | -- | -1.15 | -0.186 | -- | 997.7 | 12044 | -- | -- |
| 108.77 | 0.489 | 7.84 | 0.558 | 0.514 | -- | 0.289 | -- | -0.126 | 13.2 | -- | -- | -- | -- |
| 109.11 | 0.489 | 7.84 | 0.568 | 0.513 | -- | -- | -- | -0.124 | 13.1 | -- | -- | -- | -- |
| 113.19 | 0.496 | 7.86 | 0.684 | -- | -0.688 | -- | -- | -0.194 | -- | 997.7 | 11251 | -- | -- |
| 109.05 | 0.486 | 7.87 | -- | 0.507 | -0.567 | -- | -- | -0.249 | 13.1 | 997.6 | 11256 | -- | -- |
| 125.43 | 0.523 | 7.85 | 0.548 | -- | -- | -- | -- | -0.134 | -- | -- | -- | -- | -- |
| 117.61 | 0.507 | 7.86 | -- | 0.504 | -- | -- | -- | -0.187 | 13.1 | -- | -- | -- | -- |
| 125.01 | 0.521 | 7.87 | -- | -- | -0.553 | -- | -- | -0.255 | -- | 997.6 | 11172 | -- | -- |
| 133.35 | 0.539 | 7.86 | -- | -- | -- | -- | -- | -0.195 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 89.83 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 18 | 2 |
| 4 | 90.49 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 6 | 90.49 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 42 | 91.13 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 8 |
| 51 | 91.40 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 20 | 7 |
| 148 | 92.15 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 22 | 5 |
| 175 | 92.58 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 177 | 92.70 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 179 | 92.76 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 181 | 92.81 | wind | 9.0 | 4320 | < th | dose independent | rect. | 20 | 7 |
| 185 | 92.84 | wind | 9.0 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 188 | 92.88 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 189 | 92.92 | wind | 7.0 | 4320 | < th | dose independent | rect. | 19 | 2 |
| 191 | 92.96 | wind | 9.0 | 4320 | > th | dose independent | rect. | 19 | 2 |
| 204 | 92.98 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 215 | 93.10 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 216 | 93.10 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 220 | 93.19 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 262 | 93.64 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 18 | 8 |
| 284 | 93.81 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 312 | 94.07 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 318 | 94.12 | wind | 9.0 | 4320 | > th | dose independent | rect. | 19 | 7 |
| 351 | 94.38 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 8 | 5 |
| 368 | 94.46 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 406 | 94.59 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 8 | 16 |
| 423 | 94.65 | temperature | 20.0 | 270 | > th | dose independent | rect. | 4 | 20 |
| 424 | 94.66 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 17 | 7 |
| 444 | 94.73 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 18 | 5 |
| 469 | 94.79 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 18 |
| 514 | 94.88 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 20 | 18 |
| 535 | 94.92 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 17 | 21 |
| 584 | 95.00 | atmosphere | 1005.0 | 14400 | > th | dose independent | sin | 2 | NA |
| 607 | 95.02 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 11 | 23 |
| 625 | 95.05 | atmosphere | 1005.0 | 14400 | < th | dose independent | no | NA | NA |
| 632 | 95.06 | atmosphere | 1005.0 | 14400 | < th | dose independent | sin | 0 | NA |
| 667 | 95.10 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 21 | 17 |
| 683 | 95.13 | atmosphere | 1005.0 | 14400 | < th | dose independent | sin | 18 | NA |
| 690 | 95.13 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 6 | 17 |
| 705 | 95.15 | temperature | 20.0 | 270 | > th | dose independent | rect. | 19 | 16 |
| 728 | 95.16 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 17 | 21 |