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Os01g0616600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.16 (0.0296) R2 : 0.785
β1 : 1.9 (0.108) R2dD : 0.152 R2D : 0.105
β2 : 2.1 (0.0914) R2dC : 0.368 R2C : 0.543
β3 : -1.05 (0.0938) R2dE : 0.0886 R2E : 0.267
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.544 (0.0637) R2dN8 : 0.0475 R2N8 : -0.0155
σ : 0.55
deviance : 139.57
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C
peak time of C : 16.3
E
wheather : atmosphere
threshold : 1004
memory length : 286
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 3.24
open length of G : 2.13

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
134.9 0.546 9.17 1.93 2.11 -1.05 1.56 0.847 0.547 16.4 1004 281 3.18 2.31
135.95 0.543 9.17 1.89 2.11 -1.05 1.14 -- 0.543 16.4 1004 287 3.22 2.16
139.74 0.551 9.17 1.89 2.13 -1.03 -- 0.0873 0.508 16.4 1004 281 3.33 2.03
139.57 0.55 9.16 1.9 2.1 -1.05 -- -- 0.544 16.3 1004 286 3.24 2.13
276.96 0.775 9.09 2.14 -- -2 -- -0.352 0.584 -- 993.8 312 3.62 0.55
167.84 0.607 9.21 1.86 2.72 -- 1.25 -- 0.421 16.8 -- -- -- --
171.89 0.614 9.2 1.87 2.72 -- -- -- 0.427 16.8 -- -- -- --
265.69 0.759 9.11 2.13 -- -1.95 -- -- 0.528 -- 994 358 2.57 1.65
235.07 0.714 9.21 -- 2.11 -1.01 -- -- 0.377 16.3 1004 292 3.15 2.33
564.22 1.11 9.18 1.77 -- -- -- -- 0.357 -- -- -- -- --
263.81 0.76 9.25 -- 2.69 -- -- -- 0.219 16.8 -- -- -- --
330.15 0.846 9.18 -- -- -2.31 -- -- 0.37 -- 988.3 381 0.0167 5.4
646.42 1.19 9.22 -- -- -- -- -- 0.161 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 139.26 atmosphere 1005.0 270 > th dose independent rect. 3 3
2 139.43 temperature 10.0 90 > th dose dependent rect. 8 19
3 139.81 temperature 10.0 10 > th dose dependent rect. 8 20
4 140.01 atmosphere 1000.0 90 > th dose dependent rect. 3 5
7 140.43 atmosphere 1005.0 90 > th dose independent rect. 3 5
33 142.73 wind 5.0 270 < th dose independent rect. 3 3
36 142.85 atmosphere 1005.0 10 > th dose independent rect. 5 3
38 142.88 temperature 30.0 270 < th dose dependent rect. 3 2
44 143.13 radiation 30.0 270 < th dose dependent rect. 2 8
50 143.44 temperature 30.0 90 < th dose dependent rect. 4 17
60 143.71 temperature 30.0 90 < th dose dependent rect. 4 15
80 144.19 radiation 20.0 270 < th dose independent rect. 2 7
114 144.77 precipitation 0.1 270 < th dose independent rect. 3 3
115 144.77 precipitation 0.1 270 < th dose dependent rect. 3 3
119 144.84 wind 9.0 270 < th dose independent rect. 6 21
124 144.96 precipitation 0.1 90 < th dose independent rect. 8 20
125 144.96 precipitation 0.1 90 < th dose dependent rect. 8 20
126 144.98 wind 1.0 270 > th dose independent rect. 3 2
127 144.99 temperature 30.0 90 < th dose independent rect. 4 15
132 145.05 wind 9.0 90 < th dose independent rect. 8 20
142 145.27 precipitation 0.1 270 < th dose independent rect. 6 21
144 145.27 precipitation 0.1 270 < th dose dependent rect. 6 21
147 145.36 temperature 10.0 90 > th dose dependent rect. 8 7
163 145.49 temperature 10.0 270 > th dose dependent rect. 6 8
165 145.50 temperature 10.0 270 > th dose independent rect. 3 3
167 145.50 temperature 30.0 270 < th dose independent rect. 3 3
168 145.50 humidity 50.0 270 > th dose independent rect. 3 3
171 145.50 atmosphere 995.0 270 > th dose independent rect. 3 3
172 145.50 atmosphere 1015.0 270 < th dose independent rect. 3 3
173 145.50 radiation 20.0 270 < th dose independent rect. 3 3
176 145.50 temperature 10.0 270 > th dose independent rect. 6 21
187 145.55 temperature 10.0 90 > th dose independent rect. 8 20
188 145.56 wind 1.0 270 > th dose independent rect. 2 5
196 145.69 radiation 40.0 270 < th dose dependent rect. 3 3
198 145.70 temperature 30.0 270 < th dose independent rect. 2 17
216 145.83 radiation 40.0 270 < th dose dependent rect. 2 15
219 145.84 wind 9.0 270 < th dose dependent rect. 3 3
230 145.95 temperature 10.0 90 > th dose dependent rect. 8 9
237 146.04 temperature 30.0 90 < th dose dependent rect. 3 8
251 146.15 wind 9.0 270 < th dose dependent rect. 4 1
290 146.41 temperature 10.0 270 > th dose independent rect. 4 1
292 146.41 temperature 30.0 270 < th dose independent rect. 4 1
293 146.41 humidity 50.0 270 > th dose independent rect. 4 1
296 146.41 atmosphere 995.0 270 > th dose independent rect. 4 1
297 146.41 atmosphere 1010.0 270 < th dose independent rect. 4 1
299 146.41 radiation 20.0 270 < th dose independent rect. 4 1
302 146.41 temperature 10.0 270 > th dose independent rect. 5 23
323 146.47 humidity 90.0 10 < th dose independent rect. 3 5
331 146.50 radiation 40.0 270 < th dose dependent rect. 4 1
340 146.55 radiation 1.0 270 < th dose dependent rect. 4 1
348 146.57 radiation 40.0 90 < th dose independent rect. 3 20
405 146.82 radiation 1.0 270 < th dose independent rect. 4 1
452 147.16 radiation 40.0 90 < th dose independent rect. 4 15
454 147.16 radiation 40.0 90 < th dose dependent rect. 4 19
457 147.19 radiation 1.0 270 < th dose independent rect. 3 16
461 147.21 temperature 10.0 270 > th dose dependent rect. 22 14
463 147.23 atmosphere 995.0 90 > th dose independent rect. 8 20
505 147.38 radiation 40.0 270 < th dose independent rect. 2 15
520 147.44 temperature 15.0 10 > th dose dependent rect. 8 7
622 147.81 wind 9.0 10 < th dose dependent rect. 4 4
651 147.92 humidity 70.0 270 > th dose dependent rect. 22 3
660 147.95 humidity 60.0 270 > th dose dependent rect. 21 5
668 147.98 temperature 30.0 90 < th dose dependent rect. 3 10
711 148.16 radiation 1.0 10 > th dose independent rect. 5 3
728 148.18 humidity 70.0 90 > th dose independent rect. 4 15
743 148.20 humidity 50.0 270 > th dose dependent rect. 4 1
779 148.31 radiation 40.0 270 < th dose independent rect. 2 17
781 148.32 humidity 70.0 90 > th dose independent rect. 3 8
788 148.33 wind 9.0 1440 < th dose independent rect. 5 4
789 148.33 temperature 10.0 1440 > th dose independent rect. 5 4
792 148.33 humidity 50.0 1440 > th dose independent rect. 5 4
794 148.33 atmosphere 995.0 1440 > th dose independent rect. 5 4
795 148.33 atmosphere 1015.0 1440 < th dose independent rect. 5 4
796 148.33 temperature 10.0 1440 > th dose independent rect. 9 20
807 148.36 atmosphere 1000.0 270 > th dose independent rect. 21 5
826 148.42 humidity 60.0 90 > th dose dependent rect. 4 15
832 148.45 humidity 90.0 10 < th dose independent rect. 5 3
866 148.53 radiation 40.0 270 < th dose dependent rect. 15 16
910 148.67 radiation 40.0 10 < th dose dependent rect. 5 18
914 148.69 atmosphere 1000.0 270 > th dose independent rect. 22 3
918 148.69 temperature 30.0 10 < th dose dependent rect. 4 8
936 148.74 atmosphere 995.0 270 > th dose independent rect. 6 21
955 148.80 humidity 50.0 270 > th dose independent rect. 14 17
966 148.83 temperature 30.0 10 < th dose dependent rect. 4 10
998 148.87 humidity 50.0 270 > th dose dependent rect. 3 3