Os01g0615000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0615000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 138.55 | 0.553 | 9.88 | -0.699 | 1.37 | -2.05 | -1.04 | -1.73 | -0.197 | 22.4 | 31.48 | 252 | -- | -- |
| 141.35 | 0.554 | 9.91 | -0.936 | 1.37 | -2.04 | -1.12 | -- | -0.231 | 22.4 | 32.2 | 260 | -- | -- |
| 142.43 | 0.556 | 9.87 | -0.524 | 1.46 | -1.93 | -- | -2.24 | -0.148 | 22.2 | 31.37 | 181 | -- | -- |
| 146.48 | 0.564 | 9.91 | -0.93 | 1.37 | -2.06 | -- | -- | -0.25 | 22.3 | 32.1 | 251 | -- | -- |
| 210.71 | 0.676 | 9.89 | -1.01 | -- | -2.69 | -- | -0.703 | -0.367 | -- | 32.46 | 596 | -- | -- |
| 195.32 | 0.655 | 9.84 | -0.487 | 1.52 | -- | -0.863 | -- | 0.0859 | 20.8 | -- | -- | -- | -- |
| 197.75 | 0.659 | 9.84 | -0.457 | 1.53 | -- | -- | -- | 0.0871 | 20.7 | -- | -- | -- | -- |
| 210.6 | 0.676 | 9.89 | -1.12 | -- | -2.78 | -- | -- | -0.337 | -- | 47.57 | 616 | -- | -- |
| 167.3 | 0.602 | 9.87 | -- | 1.37 | -1.66 | -- | -- | -0.0811 | 21.9 | 32.64 | 251 | -- | -- |
| 330.09 | 0.849 | 9.8 | -0.46 | -- | -- | -- | -- | 0.0745 | -- | -- | -- | -- | -- |
| 203.24 | 0.667 | 9.83 | -- | 1.53 | -- | -- | -- | 0.138 | 20.7 | -- | -- | -- | -- |
| 240.57 | 0.722 | 9.85 | -- | -- | -2.37 | -- | -- | -0.162 | -- | 45.55 | 595 | -- | -- |
| 335.67 | 0.855 | 9.79 | -- | -- | -- | -- | -- | 0.126 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 132.53 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 2 | 133.10 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 4 | 133.57 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 6 | 133.88 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 8 | 134.28 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 11 | 135.13 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 21 | 136.10 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 22 | 136.15 | temperature | 15 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 38 | 136.89 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 46 | 137.32 | temperature | 15 | 270 | > th | dose dependent | sin | 5 | NA |
| 51 | 137.48 | temperature | 15 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 67 | 138.04 | temperature | 30 | 270 | < th | dose dependent | sin | 6 | NA |
| 89 | 138.58 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 23 |
| 121 | 139.27 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 137 | 139.56 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 157 | 140.01 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 221 | 141.19 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 9 |
| 235 | 141.40 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 262 | 141.75 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 13 |
| 279 | 141.94 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 6 |
| 361 | 142.96 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 19 |
| 373 | 143.05 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 5 |
| 394 | 143.28 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 4 |
| 403 | 143.45 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 14 |
| 408 | 143.50 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 19 |
| 438 | 143.86 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 11 |
| 441 | 143.87 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 19 |
| 503 | 144.49 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 12 |
| 530 | 144.70 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 7 |
| 659 | 145.81 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 694 | 145.98 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 4 |
| 846 | 146.83 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 21 |
| 899 | 147.11 | temperature | 25 | 270 | < th | dose independent | sin | 5 | NA |
| 919 | 147.23 | temperature | 20 | 720 | < th | dose independent | rect. | 22 | 9 |
| 946 | 147.39 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 7 |
| 953 | 147.41 | temperature | 20 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 992 | 147.63 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |