Os01g0613300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein 2058 family protein.
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Os01g0613300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein 2058 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.55 | 0.268 | 11.2 | -0.085 | 0.395 | 0.936 | -0.359 | -0.934 | -0.322 | 1.63 | 21.2 | 270 | -- | -- |
| 33.07 | 0.268 | 11.2 | 0.0924 | 0.378 | 0.862 | -0.209 | -- | -0.272 | 1.41 | 20.66 | 276 | -- | -- |
| 32.98 | 0.267 | 11.2 | -0.0161 | 0.389 | 0.915 | -- | -0.628 | -0.303 | 1.54 | 21.22 | 275 | -- | -- |
| 33.25 | 0.269 | 11.2 | 0.0993 | 0.382 | 0.866 | -- | -- | -0.271 | 1.4 | 20.7 | 274 | -- | -- |
| 34.86 | 0.275 | 11.2 | -0.0344 | -- | 0.975 | -- | -0.412 | -0.304 | -- | 16.5 | 706 | -- | -- |
| 46.42 | 0.319 | 11.2 | 0.294 | 0.313 | -- | -0.0966 | -- | -0.121 | 21.6 | -- | -- | -- | -- |
| 46.45 | 0.319 | 11.2 | 0.298 | 0.314 | -- | -- | -- | -0.121 | 21.5 | -- | -- | -- | -- |
| 35.03 | 0.276 | 11.2 | 0.0429 | -- | 0.978 | -- | -- | -0.281 | -- | 16.2 | 703 | -- | -- |
| 33.51 | 0.27 | 11.2 | -- | 0.381 | 0.886 | -- | -- | -0.283 | 1.41 | 20.6 | 275 | -- | -- |
| 52.27 | 0.338 | 11.2 | 0.301 | -- | -- | -- | -- | -0.122 | -- | -- | -- | -- | -- |
| 48.79 | 0.327 | 11.2 | -- | 0.315 | -- | -- | -- | -0.154 | 21.6 | -- | -- | -- | -- |
| 35.08 | 0.276 | 11.2 | -- | -- | 0.996 | -- | -- | -0.287 | -- | 16.1 | 704 | -- | -- |
| 54.65 | 0.345 | 11.2 | -- | -- | -- | -- | -- | -0.155 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.52 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 9 | 30.99 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 17 |
| 18 | 31.17 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 99 | 31.98 | temperature | 30 | 720 | < th | dose dependent | sin | 4 | NA |
| 135 | 32.31 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 22 |
| 187 | 32.68 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 223 | 32.85 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 224 | 32.87 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 227 | 32.87 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 318 | 33.22 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 333 | 33.28 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 383 | 33.42 | temperature | 20 | 270 | > th | dose dependent | sin | 0 | NA |
| 454 | 33.65 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 455 | 33.65 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 459 | 33.66 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 464 | 33.67 | temperature | 25 | 720 | < th | dose independent | rect. | 24 | 15 |
| 468 | 33.68 | temperature | 25 | 720 | < th | dose independent | rect. | 24 | 17 |
| 478 | 33.69 | temperature | 25 | 720 | < th | dose independent | sin | 3 | NA |
| 493 | 33.72 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 550 | 33.79 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 613 | 33.90 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 639 | 33.93 | temperature | 25 | 720 | > th | dose independent | sin | 3 | NA |
| 656 | 33.95 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 669 | 33.97 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 686 | 33.99 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 717 | 34.03 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 6 |
| 746 | 34.05 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 775 | 34.09 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 794 | 34.10 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 22 |
| 862 | 34.16 | temperature | 25 | 720 | > th | dose independent | rect. | 1 | 15 |
| 899 | 34.19 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 914 | 34.20 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 19 |