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Os01g0612000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to DNA methyltransferase PMT1-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.71 (0.0204) R2 : 0.21
β1 : -0.797 (0.0747) R2dD : 0.205 R2D : 0.209
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0264 (0.0436) R2dN8 : 0.000856 R2N8 : 0.0051
σ : 0.383
deviance : 67.14
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
55 0.348 6.61 -0.662 0.311 -0.625 0.0328 4.36 0.0523 9.92 0.4914 3181 -- --
55.64 0.347 6.69 -0.976 0.291 0.576 0.0268 -- 0.0382 10.1 0.4931 2601 -- --
54.96 0.345 6.61 -0.65 0.309 -0.644 -- 4.4 0.0501 9.89 0.5 3201 -- --
55.57 0.347 6.69 -0.964 0.308 0.577 -- -- 0.0542 9.89 0.5 2599 -- --
60.67 0.363 6.62 -0.639 -- -0.705 -- 4.56 0.0554 -- 0.5013 3053 -- --
61.78 0.368 6.7 -0.793 0.3 -- -0.0252 -- 0.026 9.69 -- -- -- --
61.79 0.368 6.7 -0.794 0.3 -- -- -- 0.026 9.71 -- -- -- --
61.25 0.365 6.7 -0.967 -- 0.58 -- -- 0.0621 -- 0.4512 2625 -- --
77.43 0.41 6.68 -- 0.312 0.22 -- -- 0.125 9.64 0.5 2630 -- --
67.14 0.383 6.71 -0.797 -- -- -- -- 0.0264 -- -- -- -- --
78.4 0.414 6.68 -- 0.303 -- -- -- 0.114 9.91 -- -- -- --
83.02 0.424 6.68 -- -- 0.205 -- -- 0.133 -- 0.5 2592 -- --
83.89 0.428 6.69 -- -- -- -- -- 0.115 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 53.97 humidity 80.0 14400 < th dose dependent rect. 6 1
2 53.99 humidity 80.0 14400 < th dose independent rect. 6 1
3 54.16 wind 1.0 4320 > th dose independent rect. 18 1
4 54.18 humidity 80.0 14400 > th dose independent rect. 6 1
5 54.20 wind 1.0 4320 < th dose independent rect. 18 1
8 54.39 precipitation 0.1 270 < th dose independent rect. 6 23
9 54.39 precipitation 0.1 270 < th dose dependent rect. 6 23
11 54.50 humidity 70.0 90 < th dose independent rect. 19 13
12 54.52 humidity 70.0 90 < th dose dependent rect. 19 13
13 54.54 humidity 90.0 90 < th dose dependent rect. 6 1
17 54.59 precipitation 0.1 4320 > th dose dependent rect. 14 3
18 54.59 radiation 1.0 1440 < th dose dependent rect. 7 10
19 54.62 precipitation 0.1 4320 > th dose dependent rect. 16 1
20 54.62 radiation 1.0 1440 < th dose dependent rect. 7 8
24 54.70 precipitation 0.1 4320 > th dose dependent rect. 4 13
34 54.84 precipitation 0.1 4320 > th dose dependent rect. 7 10
36 54.87 humidity 80.0 1440 < th dose independent rect. 11 1
49 55.04 radiation 1.0 1440 < th dose independent rect. 7 8
52 55.06 precipitation 0.1 4320 < th dose independent rect. 4 13
53 55.06 wind 3.0 43200 < th dose dependent rect. 1 1
55 55.06 precipitation 0.1 4320 < th dose dependent rect. 4 13
56 55.08 precipitation 0.1 4320 > th dose independent rect. 4 13
57 55.09 precipitation 0.1 4320 > th dose independent rect. 13 4
58 55.09 precipitation 0.1 4320 < th dose independent rect. 13 4
60 55.09 precipitation 0.1 4320 < th dose dependent rect. 13 4
61 55.11 radiation 1.0 1440 > th dose independent rect. 7 8
67 55.19 humidity 80.0 1440 > th dose independent rect. 11 1
69 55.21 humidity 90.0 10 < th dose dependent rect. 6 2
71 55.22 humidity 80.0 1440 < th dose independent rect. 8 6
73 55.25 humidity 90.0 14400 < th dose dependent rect. 2 1
82 55.29 radiation 1.0 10 > th dose dependent rect. 18 14
83 55.30 radiation 30.0 10 > th dose independent rect. 8 1
89 55.31 precipitation 0.1 4320 > th dose independent rect. 16 1
92 55.33 precipitation 0.1 4320 < th dose independent rect. 16 1
93 55.33 precipitation 0.1 4320 < th dose dependent rect. 16 1
98 55.35 precipitation 0.1 4320 > th dose dependent rect. 3 17
99 55.36 precipitation 0.1 4320 > th dose independent rect. 7 10
102 55.36 radiation 1.0 10 > th dose dependent rect. 5 3
115 55.37 atmosphere 1005.0 10 > th dose dependent rect. 7 1
123 55.40 precipitation 0.1 4320 > th dose independent rect. 4 16
124 55.40 precipitation 0.1 4320 < th dose independent rect. 4 16
125 55.40 precipitation 0.1 4320 > th dose dependent rect. 19 1
126 55.40 precipitation 0.1 4320 < th dose dependent rect. 4 16
128 55.41 precipitation 0.1 4320 < th dose independent rect. 7 10
132 55.41 precipitation 0.1 4320 < th dose dependent rect. 7 10
142 55.44 wind 3.0 43200 < th dose independent rect. 18 13
145 55.44 precipitation 0.1 4320 > th dose dependent rect. 1 19
157 55.47 atmosphere 1010.0 90 < th dose independent rect. 5 4
166 55.49 radiation 30.0 10 > th dose dependent rect. 8 1
168 55.49 wind 3.0 43200 < th dose dependent rect. 21 8
189 55.51 wind 3.0 43200 > th dose independent rect. 18 13
191 55.51 wind 3.0 43200 < th dose dependent rect. 22 6
202 55.53 humidity 80.0 1440 > th dose independent rect. 8 6
212 55.54 wind 1.0 1440 > th dose independent rect. 9 10
224 55.54 precipitation 0.1 4320 > th dose dependent sin 2 NA
225 55.54 wind 1.0 4320 < th dose dependent rect. 18 1
249 55.59 wind 5.0 43200 < th dose dependent rect. 18 12
255 55.61 wind 3.0 43200 < th dose independent sin 12 NA
259 55.61 precipitation 0.1 4320 > th dose independent rect. 13 7
267 55.62 precipitation 0.1 4320 > th dose dependent rect. 13 7
270 55.63 precipitation 0.1 4320 > th dose independent sin 1 NA
278 55.63 precipitation 0.1 4320 < th dose independent rect. 13 7
291 55.63 precipitation 0.1 4320 < th dose dependent rect. 13 7
299 55.65 precipitation 0.1 4320 < th dose independent sin 1 NA
300 55.65 temperature 15.0 90 > th dose independent rect. 23 6
302 55.65 precipitation 0.1 4320 > th dose independent rect. 1 19
303 55.65 precipitation 0.1 4320 < th dose independent rect. 1 19
304 55.65 precipitation 0.1 4320 < th dose dependent sin 1 NA
307 55.65 precipitation 0.1 4320 < th dose dependent rect. 1 19
310 55.66 wind 1.0 1440 < th dose independent rect. 9 10
312 55.66 precipitation 0.1 43200 > th dose dependent rect. 19 2
314 55.66 precipitation 0.1 4320 > th dose dependent rect. 1 16
316 55.67 wind 3.0 43200 > th dose independent sin 12 NA
329 55.68 precipitation 0.1 90 < th dose independent rect. 9 20
332 55.68 precipitation 0.1 90 < th dose dependent rect. 9 20
334 55.69 atmosphere 1010.0 90 < th dose independent rect. 5 6
413 55.74 humidity 70.0 10 < th dose independent rect. 7 1
492 55.74 humidity 70.0 10 < th dose dependent rect. 7 1
673 55.79 precipitation 0.1 4320 < th dose independent rect. 4 2
680 55.79 humidity 70.0 1440 > th dose dependent rect. 11 1
682 55.79 precipitation 0.1 4320 < th dose dependent rect. 4 2
692 55.80 wind 5.0 43200 < th dose dependent sin 11 NA
708 55.81 wind 1.0 1440 < th dose independent rect. 9 5
713 55.81 wind 3.0 43200 < th dose independent rect. 20 8
726 55.81 precipitation 0.1 4320 > th dose dependent rect. 4 2
755 55.83 wind 1.0 43200 < th dose independent rect. 22 6
809 55.88 precipitation 0.1 4320 > th dose independent rect. 4 2
817 55.89 precipitation 0.1 90 < th dose independent rect. 11 18
821 55.89 precipitation 0.1 90 < th dose dependent rect. 11 18
831 55.90 precipitation 0.1 4320 > th dose dependent rect. 18 23
834 55.91 wind 3.0 14400 < th dose dependent rect. 24 4
840 55.92 humidity 90.0 4320 > th dose independent rect. 13 1
841 55.92 wind 1.0 1440 > th dose independent rect. 9 5
845 55.92 wind 3.0 43200 < th dose dependent rect. 21 16
848 55.93 wind 3.0 43200 < th dose independent rect. 17 20
849 55.93 wind 1.0 1440 < th dose dependent rect. 9 5
855 55.94 temperature 20.0 30 > th dose independent rect. 5 6
885 55.96 temperature 20.0 90 > th dose independent rect. 5 4
886 55.96 radiation 40.0 90 < th dose independent rect. 5 6
892 55.96 temperature 15.0 30 > th dose independent rect. 11 18
903 55.97 precipitation 0.1 4320 < th dose independent rect. 4 5
916 55.97 precipitation 0.1 4320 < th dose dependent rect. 4 5
935 55.98 atmosphere 1010.0 270 < th dose independent rect. 5 1
948 55.98 precipitation 0.1 4320 > th dose dependent rect. 4 5
976 56.00 wind 3.0 43200 > th dose independent rect. 17 20
986 56.01 precipitation 0.1 90 < th dose independent rect. 23 6
994 56.01 wind 3.0 43200 < th dose independent rect. 20 20
996 56.01 wind 9.0 43200 < th dose dependent rect. 12 1