Os01g0611900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os01g0611900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.38 | 0.33 | 7.49 | 1.12 | 0.708 | 0.794 | 0.209 | -0.0144 | 0.286 | 17.6 | 80.15 | 1314 | -- | -- |
| 49.38 | 0.327 | 7.49 | 1.12 | 0.708 | 0.792 | 0.213 | -- | 0.285 | 17.6 | 80.18 | 1310 | -- | -- |
| 49.49 | 0.328 | 7.48 | 1.12 | 0.709 | 0.793 | -- | 0.0146 | 0.286 | 17.6 | 80.32 | 1314 | -- | -- |
| 49.49 | 0.328 | 7.48 | 1.12 | 0.709 | 0.794 | -- | -- | 0.287 | 17.6 | 80.29 | 1312 | -- | -- |
| 74.94 | 0.403 | 7.47 | 1.1 | -- | 0.979 | -- | 0.0147 | 0.286 | -- | 81 | 1294 | -- | -- |
| 57.68 | 0.356 | 7.5 | 1.1 | 0.767 | -- | 0.236 | -- | 0.236 | 17.4 | -- | -- | -- | -- |
| 57.81 | 0.356 | 7.5 | 1.1 | 0.768 | -- | -- | -- | 0.237 | 17.3 | -- | -- | -- | -- |
| 74.94 | 0.403 | 7.47 | 1.1 | -- | 0.982 | -- | -- | 0.283 | -- | 80.93 | 1294 | -- | -- |
| 76.92 | 0.408 | 7.49 | -- | 0.705 | 0.901 | -- | -- | 0.302 | 17.7 | 84.47 | 2694 | -- | -- |
| 88.58 | 0.44 | 7.49 | 1.07 | -- | -- | -- | -- | 0.218 | -- | -- | -- | -- | -- |
| 89.74 | 0.443 | 7.52 | -- | 0.749 | -- | -- | -- | 0.115 | 17.4 | -- | -- | -- | -- |
| 103 | 0.473 | 7.47 | -- | -- | 0.991 | -- | -- | 0.306 | -- | 84.67 | 2709 | -- | -- |
| 119.02 | 0.509 | 7.51 | -- | -- | -- | -- | -- | 0.0989 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.89 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 2 | 47.08 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 3 | 47.53 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 8 | 47.75 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 11 | 48.13 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 20 | 48.66 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 23 | 48.72 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 25 | 48.78 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 26 | 48.78 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 35 | 49.14 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 20 | 19 |
| 41 | 49.28 | wind | 1.0 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 45 | 49.37 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 21 | 18 |
| 47 | 49.37 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 20 | 19 |
| 51 | 49.40 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 7 | 18 |
| 72 | 49.52 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 4 |
| 81 | 49.57 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 17 | 22 |
| 94 | 49.61 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 2 | 15 |
| 96 | 49.62 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 4 |
| 97 | 49.62 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 4 |
| 98 | 49.63 | humidity | 80.0 | 1440 | < th | dose independent | sin | 1 | NA |
| 104 | 49.65 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 4 |
| 112 | 49.66 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 113 | 49.67 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 9 | 17 |
| 118 | 49.68 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 4 | 11 |
| 140 | 49.70 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 9 | 21 |
| 148 | 49.72 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 7 | 20 |
| 152 | 49.73 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 7 | 18 |
| 181 | 49.76 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 1 | 14 |
| 185 | 49.77 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 18 |
| 220 | 49.80 | humidity | 80.0 | 1440 | > th | dose independent | sin | 0 | NA |
| 236 | 49.81 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 249 | 49.82 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 4 | 19 |
| 261 | 49.82 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 263 | 49.83 | humidity | 80.0 | 1440 | > th | dose independent | no | NA | NA |
| 274 | 49.84 | wind | 1.0 | 43200 | < th | dose independent | rect. | 1 | 2 |
| 306 | 49.87 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 337 | 49.90 | humidity | 80.0 | 1440 | < th | dose independent | no | NA | NA |
| 341 | 49.90 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 7 |
| 350 | 49.92 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 1 | 16 |
| 353 | 49.92 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 1 | 16 |
| 358 | 49.93 | wind | 1.0 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 371 | 49.94 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 374 | 49.94 | humidity | 70.0 | 1440 | > th | dose dependent | no | NA | NA |
| 375 | 49.94 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 3 | 4 |
| 378 | 49.94 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 4 | 23 |
| 380 | 49.95 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 382 | 49.95 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 1 | 16 |
| 385 | 49.95 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 396 | 49.96 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 412 | 49.98 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 427 | 49.99 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 4 | 11 |
| 434 | 49.99 | humidity | 70.0 | 1440 | > th | dose dependent | sin | 2 | NA |
| 435 | 49.99 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 465 | 50.02 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 490 | 50.05 | radiation | 30.0 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 509 | 50.06 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 15 | 12 |
| 514 | 50.06 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 15 | 17 |
| 518 | 50.07 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 15 | 5 |
| 542 | 50.08 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 578 | 50.11 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 24 | 7 |
| 606 | 50.13 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 609 | 50.14 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 646 | 50.17 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 15 | 17 |
| 650 | 50.17 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 16 | 16 |
| 655 | 50.18 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 15 | 5 |
| 706 | 50.21 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 16 | 5 |
| 731 | 50.23 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 5 |
| 732 | 50.23 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 747 | 50.24 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 19 | 6 |
| 753 | 50.25 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 7 |
| 754 | 50.25 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 7 |
| 759 | 50.25 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 7 |
| 769 | 50.27 | wind | 1.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 775 | 50.28 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 812 | 50.31 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 819 | 50.31 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 18 | 23 |
| 871 | 50.36 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 945 | 50.42 | humidity | 60.0 | 14400 | > th | dose independent | sin | 13 | NA |
| 947 | 50.42 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 3 | 5 |
| 949 | 50.42 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 3 | 5 |
| 964 | 50.43 | precipitation | 0.1 | 4320 | > th | dose dependent | sin | 4 | NA |
| 987 | 50.44 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 5 | 22 |
| 989 | 50.45 | humidity | 60.0 | 14400 | < th | dose independent | sin | 13 | NA |
| 994 | 50.45 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |