Os01g0611100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to GTP-binding nuclear protein Ran-2.
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Os01g0611100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to GTP-binding nuclear protein Ran-2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.31 | 0.323 | 11.2 | 0.47 | 0.281 | 0.989 | 0.257 | 0.209 | 0.0501 | 11.5 | 10.24 | 10 | -- | -- |
| 47.3 | 0.323 | 11.2 | 0.443 | 0.28 | 0.99 | 0.316 | -- | 0.0446 | 11.7 | 10.24 | 10 | -- | -- |
| 47.48 | 0.321 | 11.1 | 0.517 | 0.275 | 1.01 | -- | 0.518 | 0.0595 | 11.2 | 7.427 | 7 | -- | -- |
| 47.7 | 0.322 | 11.2 | 0.447 | 0.275 | 1.02 | -- | -- | 0.04 | 11.3 | 9.737 | 7 | -- | -- |
| 51.28 | 0.335 | 11.2 | 0.466 | -- | 1.26 | -- | 0.499 | 0.0242 | -- | 8.605 | 5 | -- | -- |
| 56.56 | 0.353 | 11.1 | 0.627 | 0.522 | -- | 0.487 | -- | 0.181 | 13 | -- | -- | -- | -- |
| 57.54 | 0.355 | 11.1 | 0.644 | 0.52 | -- | -- | -- | 0.183 | 12.8 | -- | -- | -- | -- |
| 51.4 | 0.334 | 11.2 | 0.396 | -- | 1.26 | -- | -- | 0.00403 | -- | 9.017 | 2 | -- | -- |
| 52.47 | 0.337 | 11.2 | -- | 0.231 | 1.23 | -- | -- | -0.0349 | 10.5 | 7.607 | 4 | -- | -- |
| 74.44 | 0.403 | 11.1 | 0.625 | -- | -- | -- | -- | 0.173 | -- | -- | -- | -- | -- |
| 68.48 | 0.387 | 11.1 | -- | 0.51 | -- | -- | -- | 0.111 | 12.8 | -- | -- | -- | -- |
| 55.3 | 0.346 | 11.2 | -- | -- | 1.39 | -- | -- | -0.054 | -- | 6.577 | 2 | -- | -- |
| 84.74 | 0.43 | 11.1 | -- | -- | -- | -- | -- | 0.104 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.24 | temperature | 10 | 10 | > th | dose dependent | sin | 4 | NA |
| 16 | 44.57 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 22 |
| 23 | 44.71 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 22 |
| 28 | 44.90 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 19 |
| 36 | 44.97 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 20 |
| 38 | 44.98 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 56 | 45.36 | temperature | 30 | 30 | < th | dose dependent | sin | 4 | NA |
| 71 | 45.51 | temperature | 30 | 90 | < th | dose dependent | rect. | 2 | 17 |
| 80 | 45.62 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 18 |
| 93 | 45.73 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 16 |
| 97 | 45.76 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 116 | 45.88 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 20 |
| 119 | 45.91 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 20 |
| 121 | 45.94 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 22 |
| 128 | 45.98 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 131 | 45.99 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 17 |
| 160 | 46.22 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 19 |
| 177 | 46.34 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 184 | 46.40 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 10 |
| 344 | 46.95 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 20 |
| 367 | 47.00 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 12 |
| 391 | 47.11 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 11 |
| 408 | 47.16 | radiation | 10 | 43200 | < th | dose dependent | rect. | 21 | 6 |
| 475 | 47.32 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 618 | 47.56 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 619 | 47.56 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 789 | 47.88 | radiation | 10 | 4320 | > th | dose dependent | rect. | 16 | 15 |
| 797 | 47.89 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 801 | 47.90 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 843 | 47.97 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 847 | 47.98 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 864 | 48.03 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 878 | 48.04 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 920 | 48.11 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 933 | 48.14 | radiation | 10 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 964 | 48.16 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |