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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0611000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Unidentified precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.88 (0.153) R2 : 0.489
β1 : -11.8 (0.981) R2dD : 0.935 R2D : 0.0479
β2 : 1.04 (0.29) R2dC : 0.0145 R2C : -0.0805
β3 : 5.07 (0.63) R2dE : 0.203 R2E : -0.17
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -20.6 (4.91) R2dD*E : 0.131 R2D*E : -0.556
γ1 : -2.94 (0.308) R2dN8 : 0.222 R2N8 : -0.0384
σ : 2.12
deviance : 2075.49
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_____
C
peak time of C : 7.88
E
wheather : temperature
threshold : 25.37
memory length : 979
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 6.62
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
2062.93 2.13 6.9 -11.8 1.06 5.16 -2.09 -21.2 -2.97 8.12 25.35 972 6.86 --
2158.42 2.16 6.51 -8.2 0.905 3.23 -1.09 -- -2.28 9.26 24.63 896 6.93 --
2075.49 2.12 6.88 -11.8 1.04 5.07 -- -20.6 -2.94 7.88 25.37 979 6.62 --
2148.27 2.16 6.48 -8.14 1.1 3.11 -- -- -2.37 8.42 24.04 894 8.3 --
2119.25 2.14 6.96 -12 -- 4.99 -- -19.7 -3.15 -- 25.1 1097 7.21 --
2367.56 2.28 6.43 -7.46 1.58 -- -1.16 -- -2.06 5.34 -- -- -- --
2370.8 2.28 6.43 -7.46 1.57 -- -- -- -2.05 5.23 -- -- -- --
2197.98 2.18 6.55 -8.22 -- 3.12 -- -- -2.45 -- 23.56 1007 8.22 --
3791.84 2.87 6.23 -- 1.32 1.34 -- -- -1.18 6.42 25.3 859 7.48 --
2499.73 2.34 6.45 -7.41 -- -- -- -- -2.01 -- -- -- -- --
3838.55 2.9 6.24 -- 1.44 -- -- -- -1.22 5.43 -- -- -- --
3864.42 2.9 6.28 -- -- 1.65 -- -- -1.26 -- 25 938 6.86 --
3947.25 2.93 6.26 -- -- -- -- -- -1.19 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 2085.73 temperature 25 720 > th dose dependent rect. 16 17
4 2095.43 wind 3 43200 > th dose dependent rect. 11 4
6 2097.29 temperature 25 720 > th dose dependent rect. 16 7
8 2098.59 humidity 80 43200 < th dose dependent rect. 21 2
9 2098.73 wind 3 43200 > th dose dependent rect. 10 6
11 2099.50 wind 5 43200 > th dose dependent rect. 13 3
18 2101.55 temperature 25 720 > th dose dependent sin 12 NA
20 2101.96 wind 3 43200 > th dose dependent rect. 13 1
27 2103.61 wind 5 43200 > th dose independent rect. 11 5
41 2105.46 wind 5 43200 > th dose independent rect. 10 7
42 2105.66 wind 5 43200 < th dose independent rect. 10 7
43 2106.10 wind 5 43200 < th dose independent rect. 11 5
46 2106.86 radiation 1 720 > th dose dependent rect. 18 11
79 2111.52 temperature 25 1440 > th dose dependent rect. 16 1
85 2112.24 humidity 80 43200 < th dose dependent rect. 24 1
86 2112.28 wind 9 43200 < th dose dependent rect. 10 5
92 2112.87 radiation 40 43200 > th dose independent rect. 10 1
127 2115.41 wind 5 43200 < th dose independent rect. 11 19
132 2115.91 radiation 40 43200 < th dose independent rect. 9 2
135 2116.00 wind 5 43200 < th dose independent sin 22 NA
136 2116.01 wind 5 43200 < th dose independent rect. 10 12
138 2116.05 humidity 50 1440 < th dose independent rect. 16 1
145 2116.46 humidity 50 1440 < th dose dependent rect. 16 1
153 2116.57 wind 5 43200 > th dose independent rect. 10 12
155 2116.60 wind 3 43200 > th dose dependent sin 23 NA
157 2116.66 wind 5 43200 > th dose independent sin 21 NA
161 2116.77 radiation 40 43200 > th dose dependent rect. 10 2
175 2117.26 radiation 1 720 > th dose dependent rect. 18 1
191 2117.55 wind 5 43200 > th dose independent rect. 11 17
241 2118.90 radiation 20 43200 < th dose independent rect. 8 1
301 2120.31 wind 3 43200 > th dose dependent rect. 11 19
302 2120.33 wind 7 43200 < th dose independent rect. 5 12
321 2120.86 radiation 40 43200 > th dose dependent rect. 7 5
362 2121.51 radiation 10 43200 > th dose independent rect. 9 2
378 2121.83 radiation 20 43200 < th dose independent rect. 3 6
380 2121.84 radiation 20 43200 < th dose independent rect. 18 15
382 2121.85 radiation 20 43200 < th dose independent rect. 1 8
391 2121.92 radiation 20 43200 < th dose independent rect. 20 13
395 2121.97 radiation 20 43200 < th dose independent rect. 22 11
453 2123.00 humidity 80 43200 < th dose independent rect. 21 2
466 2123.11 wind 5 43200 > th dose dependent rect. 12 13
545 2124.24 radiation 40 43200 < th dose independent rect. 3 9
546 2124.25 radiation 40 43200 < th dose independent rect. 18 18
548 2124.26 radiation 40 43200 < th dose independent rect. 1 11
554 2124.31 radiation 40 43200 < th dose independent rect. 20 16
556 2124.32 radiation 40 43200 < th dose independent rect. 7 5
560 2124.35 radiation 40 43200 < th dose independent rect. 22 14
695 2125.71 radiation 40 43200 > th dose independent rect. 7 4
783 2126.65 radiation 40 43200 > th dose dependent sin 10 NA
848 2127.43 wind 7 43200 > th dose independent rect. 24 17
890 2128.18 wind 9 43200 < th dose independent rect. 13 1
931 2128.92 wind 3 43200 < th dose dependent rect. 9 1
949 2129.20 humidity 50 1440 > th dose independent rect. 16 1
963 2129.37 radiation 40 43200 < th dose independent sin 9 NA
968 2129.39 wind 1 43200 < th dose dependent rect. 24 2