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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0610800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Thrombospondin, type I repeat containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.59 (0.0434) R2 : 0.695
β1 : -4.39 (0.16) R2dD : 0.535 R2D : 0.283
β2 : 1.22 (0.113) R2dC : 0.0795 R2C : 0.0109
β3 : -1.62 (0.135) R2dE : 0.103 R2E : -0.0973
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.65 (0.094) R2dN8 : 0.287 R2N8 : 0.0443
σ : 0.807
deviance : 299.89
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_____
C
peak time of C : 17.4
E
wheather : humidity
threshold : 73.93
memory length : 1347
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
297.56 0.81 6.6 -4.49 1.23 -1.64 -0.808 0.64 -1.67 17.5 73.44 1344 -- --
298.51 0.805 6.59 -4.39 1.23 -1.62 -0.763 -- -1.64 17.5 73.64 1343 -- --
299.11 0.805 6.6 -4.48 1.22 -1.65 -- 0.581 -1.67 17.5 73.45 1347 -- --
299.89 0.807 6.59 -4.39 1.22 -1.62 -- -- -1.65 17.4 73.93 1347 -- --
333.26 0.85 6.59 -4.49 -- -2.18 -- 1.61 -1.66 -- 74 1899 -- --
391.28 0.927 6.54 -4.1 1.11 -- -0.997 -- -1.42 17.9 -- -- -- --
393.7 0.929 6.54 -4.09 1.11 -- -- -- -1.42 17.9 -- -- -- --
340.15 0.859 6.59 -4.38 -- -2.14 -- -- -1.68 -- 74 1860 -- --
725.59 1.25 6.48 -- 1.39 -2.4 -- -- -1.33 16 88 1116 -- --
457.12 0.999 6.52 -4.12 -- -- -- -- -1.45 -- -- -- -- --
834.72 1.35 6.44 -- 1.17 -- -- -- -0.965 17.7 -- -- -- --
745.2 1.27 6.48 -- -- -1.63 -- -- -1.24 -- 87.06 402 -- --
905.76 1.4 6.42 -- -- -- -- -- -0.989 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 293.22 radiation 10 1440 < th dose dependent rect. 10 8
3 293.53 radiation 10 1440 < th dose dependent rect. 10 12
9 293.68 radiation 10 1440 < th dose dependent rect. 10 18
39 295.14 radiation 10 1440 < th dose dependent sin 19 NA
43 295.60 humidity 80 1440 > th dose independent rect. 7 12
59 296.12 humidity 80 1440 > th dose independent sin 0 NA
68 296.98 humidity 60 1440 > th dose dependent rect. 11 10
70 297.13 humidity 60 1440 > th dose dependent rect. 11 8
73 297.15 humidity 90 1440 < th dose dependent rect. 11 10
81 297.47 humidity 80 1440 < th dose independent rect. 7 13
105 297.90 humidity 80 1440 < th dose independent sin 0 NA
144 298.68 humidity 90 1440 < th dose dependent sin 21 NA
167 299.03 humidity 60 1440 > th dose dependent sin 21 NA
187 299.29 humidity 70 1440 > th dose independent rect. 11 21
199 299.41 humidity 90 1440 < th dose dependent rect. 3 18
221 299.65 humidity 70 1440 > th dose independent rect. 11 11
224 299.66 humidity 70 1440 > th dose independent rect. 11 9
233 299.72 humidity 70 1440 > th dose independent rect. 11 17
300 300.26 humidity 50 1440 > th dose dependent rect. 3 18
372 300.86 humidity 90 1440 < th dose dependent rect. 11 19
421 301.13 radiation 10 1440 > th dose independent rect. 11 20
481 301.63 humidity 70 1440 > th dose independent sin 18 NA
607 302.42 radiation 10 1440 > th dose independent rect. 11 7
737 303.01 humidity 70 1440 < th dose independent rect. 11 21
738 303.02 humidity 90 1440 < th dose dependent no NA NA
757 303.10 humidity 90 1440 < th dose dependent rect. 20 23
785 303.25 humidity 70 1440 < th dose independent rect. 11 9
808 303.31 humidity 70 1440 > th dose independent rect. 17 23
873 303.69 humidity 90 1440 < th dose dependent rect. 17 23
891 303.87 humidity 70 1440 < th dose independent sin 17 NA
920 304.05 humidity 80 1440 > th dose independent rect. 11 4