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Os01g0610400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.6 (0.0185) R2 : 0.451
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.889 (0.0482) R2dC : 0.412 R2C : 0.407
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.206 (0.0389) R2dN8 : 0.0437 R2N8 : 0.039
σ : 0.348
deviance : 55.49
__
_____
C
peak time of C : 17.1
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
47.97 0.325 10.7 -0.299 0.895 -0.181 0.325 -1.91 -0.303 17.1 21.45 3387 -- --
53.73 0.341 10.6 0.231 0.874 -0.139 0.22 -- -0.143 17.2 24 2432 -- --
48.19 0.323 10.7 -0.282 0.884 -0.127 -- -1.74 -0.304 17.1 21.69 2694 -- --
53.23 0.34 10.6 0.256 0.871 -0.169 -- -- -0.122 17.3 24.1 1154 -- --
89.45 0.441 10.7 -0.288 -- -0.182 -- -1.78 -0.31 -- 21.7 2707 -- --
54.36 0.346 10.6 0.188 0.89 -- 0.279 -- -0.186 17.1 -- -- -- --
54.55 0.346 10.6 0.188 0.892 -- -- -- -0.185 17.1 -- -- -- --
92.04 0.449 10.6 0.0763 -- 0.228 -- -- -0.322 -- 24.12 1202 -- --
54.8 0.345 10.6 -- 0.875 -0.131 -- -- -0.16 17.2 24.32 1235 -- --
96.27 0.458 10.6 0.157 -- -- -- -- -0.208 -- -- -- -- --
55.49 0.348 10.6 -- 0.889 -- -- -- -0.206 17.1 -- -- -- --
90.14 0.444 10.7 -- -- 0.267 -- -- -0.35 -- 24.7 1242 -- --
96.92 0.46 10.6 -- -- -- -- -- -0.225 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 45.04 temperature 10.0 43200 > th dose independent rect. 10 6
3 45.90 atmosphere 1000.0 10 > th dose independent rect. 20 8
4 45.90 radiation 40.0 10 < th dose independent rect. 4 16
5 45.95 temperature 10.0 90 > th dose dependent rect. 8 7
6 45.96 humidity 90.0 90 < th dose independent rect. 8 7
7 46.00 wind 5.0 270 < th dose independent rect. 3 2
10 46.14 temperature 20.0 270 > th dose independent rect. 13 17
15 46.17 atmosphere 1000.0 90 > th dose dependent rect. 3 5
16 46.19 temperature 15.0 90 > th dose independent rect. 8 19
18 46.24 wind 5.0 90 < th dose independent rect. 3 5
19 46.24 precipitation 0.1 270 < th dose independent rect. 5 22
20 46.24 precipitation 0.1 270 < th dose dependent rect. 5 22
22 46.29 temperature 15.0 270 > th dose independent rect. 6 8
23 46.30 temperature 10.0 270 > th dose dependent rect. 6 7
24 46.33 temperature 10.0 270 > th dose dependent rect. 3 2
25 46.33 temperature 15.0 90 > th dose dependent rect. 15 17
26 46.34 humidity 80.0 270 > th dose independent rect. 3 2
27 46.35 temperature 10.0 10 > th dose dependent rect. 9 5
28 46.36 wind 5.0 10 < th dose independent rect. 4 5
31 46.38 precipitation 0.1 90 < th dose independent rect. 8 19
32 46.38 precipitation 0.1 90 < th dose dependent rect. 8 19
34 46.39 atmosphere 1000.0 270 > th dose dependent rect. 3 2
37 46.40 temperature 20.0 90 > th dose independent rect. 8 7
39 46.41 temperature 20.0 270 > th dose independent rect. 11 20
40 46.41 atmosphere 1000.0 10 > th dose dependent rect. 4 5
43 46.43 temperature 10.0 90 > th dose dependent rect. 3 5
44 46.44 radiation 1.0 270 > th dose independent rect. 6 8
48 46.45 radiation 1.0 270 < th dose dependent rect. 3 9
52 46.48 humidity 80.0 90 < th dose independent rect. 23 15
56 46.49 temperature 15.0 270 > th dose dependent rect. 22 9
57 46.50 precipitation 0.1 10 < th dose independent rect. 20 8
60 46.50 wind 9.0 10 < th dose dependent rect. 4 5
61 46.50 precipitation 0.1 10 < th dose dependent rect. 20 8
66 46.54 wind 9.0 10 < th dose independent rect. 20 8
68 46.54 radiation 1.0 270 > th dose independent rect. 17 21
76 46.57 temperature 10.0 10 > th dose independent rect. 20 8
77 46.57 temperature 30.0 10 < th dose independent rect. 20 8
78 46.57 humidity 50.0 10 > th dose independent rect. 20 8
82 46.57 radiation 1.0 10 < th dose independent rect. 20 8
87 46.57 temperature 10.0 10 > th dose independent rect. 4 16
89 46.57 atmosphere 1015.0 10 < th dose independent rect. 4 16
90 46.57 radiation 1.0 10 < th dose dependent rect. 20 8
97 46.58 humidity 60.0 90 > th dose dependent sin 6 NA
98 46.58 humidity 90.0 90 < th dose dependent sin 6 NA
100 46.59 humidity 90.0 10 < th dose independent rect. 9 6
108 46.62 precipitation 0.1 270 < th dose independent rect. 6 8
110 46.62 precipitation 0.1 270 < th dose dependent rect. 6 8
116 46.66 radiation 10.0 270 < th dose independent rect. 17 9
117 46.66 precipitation 0.1 270 < th dose independent rect. 17 9
119 46.66 temperature 15.0 270 > th dose dependent rect. 9 1
121 46.66 precipitation 0.1 270 < th dose dependent rect. 17 9
131 46.69 temperature 15.0 270 > th dose independent rect. 5 22
134 46.70 wind 9.0 270 < th dose independent rect. 6 8
152 46.70 radiation 1.0 270 < th dose dependent rect. 3 2
162 46.71 precipitation 0.1 10 < th dose independent rect. 4 16
163 46.71 wind 9.0 10 < th dose independent rect. 9 19
164 46.71 precipitation 0.1 10 < th dose dependent rect. 4 16
179 46.73 wind 9.0 90 < th dose dependent rect. 3 5
185 46.74 humidity 90.0 90 < th dose dependent rect. 20 18
187 46.75 temperature 10.0 10 > th dose dependent rect. 4 5
189 46.76 precipitation 0.1 90 < th dose independent rect. 8 7
190 46.76 radiation 1.0 270 < th dose independent rect. 3 9
195 46.76 precipitation 0.1 90 < th dose dependent rect. 8 7
197 46.77 temperature 10.0 270 > th dose independent rect. 3 2
199 46.77 temperature 30.0 270 < th dose independent rect. 3 2
200 46.77 humidity 50.0 270 > th dose independent rect. 3 2
203 46.77 atmosphere 995.0 270 > th dose independent rect. 3 2
204 46.77 atmosphere 1010.0 270 < th dose independent rect. 3 2
206 46.77 radiation 20.0 270 < th dose independent rect. 3 2
209 46.77 precipitation 0.1 270 < th dose independent rect. 3 2
212 46.77 radiation 30.0 270 < th dose dependent rect. 3 2
214 46.77 precipitation 0.1 270 < th dose dependent rect. 3 2
220 46.78 atmosphere 995.0 270 > th dose independent rect. 6 8
221 46.78 atmosphere 1015.0 270 < th dose independent rect. 6 8
222 46.78 temperature 10.0 270 > th dose independent rect. 14 16
229 46.79 wind 9.0 270 < th dose independent rect. 14 16
234 46.80 radiation 1.0 270 < th dose independent rect. 3 2
238 46.80 temperature 15.0 10 > th dose dependent rect. 16 16
239 46.81 precipitation 0.1 10 < th dose independent rect. 4 5
241 46.81 wind 9.0 90 < th dose independent rect. 8 19
242 46.81 wind 9.0 270 < th dose dependent rect. 3 2
243 46.81 humidity 50.0 270 > th dose dependent rect. 3 2
244 46.81 precipitation 0.1 10 < th dose dependent rect. 4 5
246 46.81 temperature 10.0 10 > th dose dependent rect. 15 18
249 46.82 temperature 10.0 10 > th dose independent rect. 4 5
251 46.82 temperature 30.0 10 < th dose independent rect. 4 5
252 46.82 humidity 50.0 10 > th dose independent rect. 4 5
254 46.82 atmosphere 995.0 10 > th dose independent rect. 4 5
255 46.82 atmosphere 1015.0 10 < th dose independent rect. 4 5
256 46.82 wind 9.0 90 < th dose independent rect. 8 7
258 46.82 temperature 10.0 10 > th dose independent rect. 9 19
260 46.83 humidity 50.0 270 > th dose independent rect. 17 9
262 46.83 wind 9.0 270 < th dose independent rect. 5 22
265 46.84 temperature 20.0 10 > th dose independent rect. 9 6
271 46.85 wind 9.0 10 < th dose independent rect. 4 16
274 46.86 radiation 30.0 270 < th dose dependent rect. 17 9
283 46.88 atmosphere 995.0 90 > th dose independent rect. 8 7
285 46.88 atmosphere 995.0 10 > th dose independent rect. 9 19
287 46.88 wind 9.0 10 < th dose dependent rect. 20 8
291 46.89 atmosphere 1015.0 90 < th dose independent rect. 8 7
314 46.92 temperature 10.0 270 > th dose independent rect. 17 9
315 46.92 temperature 30.0 270 < th dose independent rect. 17 9
316 46.92 atmosphere 995.0 270 > th dose independent rect. 17 9
321 46.92 temperature 10.0 270 > th dose independent rect. 2 15
322 46.92 atmosphere 1015.0 270 < th dose independent rect. 2 15
330 46.93 wind 9.0 270 < th dose independent rect. 17 9
337 46.94 wind 1.0 270 > th dose independent rect. 3 2
350 46.96 temperature 10.0 90 > th dose independent rect. 3 5
352 46.96 temperature 30.0 90 < th dose independent rect. 3 5
353 46.96 humidity 50.0 90 > th dose independent rect. 3 5
355 46.96 atmosphere 995.0 90 > th dose independent rect. 3 5
356 46.96 atmosphere 1015.0 90 < th dose independent rect. 3 5
357 46.96 precipitation 0.1 90 < th dose independent rect. 3 5
362 46.96 precipitation 0.1 90 < th dose dependent rect. 3 5
365 46.97 atmosphere 1005.0 10 > th dose independent rect. 4 5
377 46.98 radiation 1.0 90 > th dose independent rect. 8 7
383 46.99 radiation 40.0 90 < th dose independent rect. 15 17
387 46.99 temperature 20.0 90 > th dose dependent rect. 17 15
409 47.02 radiation 40.0 90 < th dose independent rect. 3 5
419 47.03 humidity 60.0 90 > th dose dependent rect. 3 10
448 47.05 radiation 40.0 10 < th dose dependent rect. 4 16
453 47.07 radiation 1.0 270 > th dose independent sin 3 NA
469 47.08 humidity 90.0 90 < th dose dependent rect. 8 6
471 47.08 humidity 90.0 90 < th dose dependent rect. 24 14
477 47.09 atmosphere 1005.0 270 > th dose independent rect. 4 1
507 47.12 temperature 10.0 10 > th dose dependent rect. 20 8
513 47.13 wind 9.0 270 < th dose independent rect. 2 15
527 47.15 wind 5.0 270 < th dose independent rect. 1 6
529 47.15 wind 1.0 90 > th dose independent rect. 8 7
542 47.16 humidity 90.0 10 < th dose dependent rect. 9 5
545 47.17 humidity 80.0 90 < th dose independent sin 5 NA
547 47.17 radiation 40.0 10 < th dose independent rect. 4 5
578 47.19 humidity 60.0 90 > th dose dependent rect. 3 12
582 47.20 wind 1.0 10 > th dose independent rect. 9 6
592 47.20 radiation 1.0 270 < th dose dependent rect. 3 15
629 47.24 atmosphere 1000.0 270 > th dose dependent rect. 1 6
635 47.25 temperature 10.0 4320 > th dose dependent rect. 21 1
636 47.25 temperature 30.0 4320 < th dose dependent rect. 21 1
641 47.25 atmosphere 995.0 10 > th dose dependent rect. 20 8
651 47.26 precipitation 0.1 270 < th dose independent rect. 2 15
654 47.26 temperature 15.0 270 > th dose independent rect. 6 20
659 47.26 precipitation 0.1 270 < th dose dependent rect. 2 15
662 47.27 humidity 50.0 270 > th dose independent rect. 6 8
670 47.28 temperature 10.0 270 > th dose dependent rect. 1 6
676 47.29 radiation 1.0 10 > th dose independent rect. 9 6
692 47.30 atmosphere 995.0 10 > th dose independent rect. 4 16
703 47.31 wind 9.0 10 < th dose independent rect. 9 6
704 47.31 temperature 10.0 10 > th dose independent rect. 9 6
706 47.31 atmosphere 995.0 10 > th dose independent rect. 9 6
707 47.31 atmosphere 1015.0 10 < th dose independent rect. 9 6
708 47.31 precipitation 0.1 10 < th dose independent rect. 9 6
714 47.31 temperature 10.0 10 > th dose independent rect. 15 18
717 47.31 precipitation 0.1 10 < th dose dependent rect. 9 6
726 47.32 temperature 20.0 10 > th dose dependent rect. 16 14
731 47.33 temperature 20.0 720 > th dose dependent sin 14 NA
733 47.33 wind 9.0 270 < th dose dependent rect. 6 7
738 47.34 humidity 90.0 270 < th dose dependent rect. 9 1
741 47.34 humidity 50.0 10 > th dose dependent rect. 4 16
763 47.36 temperature 10.0 10 > th dose dependent rect. 9 19
778 47.38 humidity 80.0 270 > th dose independent rect. 2 4
782 47.38 wind 9.0 10 < th dose independent rect. 15 18
784 47.38 precipitation 0.1 270 < th dose independent rect. 6 20
795 47.38 precipitation 0.1 270 < th dose dependent rect. 6 20
824 47.40 precipitation 0.1 270 < th dose independent rect. 14 16
838 47.40 precipitation 0.1 270 < th dose dependent rect. 14 16
859 47.41 temperature 20.0 720 > th dose dependent rect. 17 8
860 47.41 humidity 60.0 90 > th dose dependent rect. 3 14
893 47.44 radiation 1.0 270 < th dose independent rect. 3 14
897 47.44 radiation 1.0 270 > th dose dependent rect. 9 1
911 47.45 temperature 20.0 270 > th dose independent rect. 23 8
914 47.45 atmosphere 995.0 90 > th dose independent rect. 15 17
921 47.46 temperature 10.0 1440 > th dose independent rect. 10 6
925 47.46 temperature 10.0 1440 > th dose independent rect. 16 18
973 47.49 radiation 40.0 10 < th dose independent rect. 15 18