Os01g0607900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os01g0607900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 307.83 | 0.824 | 5.68 | -2.24 | 1.63 | 2.18 | 0.228 | -0.393 | -0.555 | 7.07 | 22.39 | 1386 | -- | -- |
| 307.92 | 0.817 | 5.67 | -2.13 | 1.63 | 2.17 | 0.249 | -- | -0.546 | 7.06 | 21.91 | 1385 | -- | -- |
| 307.96 | 0.817 | 5.68 | -2.23 | 1.63 | 2.18 | -- | -0.382 | -0.553 | 7.08 | 22.4 | 1378 | -- | -- |
| 308.05 | 0.817 | 5.67 | -2.12 | 1.64 | 2.16 | -- | -- | -0.539 | 7.05 | 21.97 | 1385 | -- | -- |
| 448.25 | 0.986 | 5.71 | -2.19 | -- | 2.23 | -- | -0.284 | -0.507 | -- | 22.78 | 1366 | -- | -- |
| 475.64 | 1.02 | 5.56 | -1.36 | 1.73 | -- | 0.34 | -- | -0.0448 | 6.59 | -- | -- | -- | -- |
| 475.93 | 1.02 | 5.56 | -1.35 | 1.73 | -- | -- | -- | -0.0459 | 6.58 | -- | -- | -- | -- |
| 448.31 | 0.986 | 5.7 | -2.11 | -- | 2.2 | -- | -- | -0.491 | -- | 22.66 | 1371 | -- | -- |
| 415.65 | 0.95 | 5.56 | -- | 1.63 | 1.69 | -- | -- | -0.0732 | 7.21 | 24.47 | 1306 | -- | -- |
| 631.77 | 1.17 | 5.59 | -1.31 | -- | -- | -- | -- | -0.0106 | -- | -- | -- | -- | -- |
| 524.17 | 1.07 | 5.52 | -- | 1.71 | -- | -- | -- | 0.105 | 6.63 | -- | -- | -- | -- |
| 554.8 | 1.1 | 5.61 | -- | -- | 1.72 | -- | -- | -0.0948 | -- | 23.93 | 1357 | -- | -- |
| 677.11 | 1.21 | 5.56 | -- | -- | -- | -- | -- | 0.135 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 306.67 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 9 |
| 2 | 306.67 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 11 |
| 16 | 307.55 | temperature | 20 | 1440 | > th | dose dependent | sin | 19 | NA |
| 18 | 307.60 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 18 |
| 95 | 308.62 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 16 |
| 144 | 308.95 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 21 |
| 302 | 309.85 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 356 | 310.18 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 364 | 310.23 | temperature | 15 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 369 | 310.25 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 408 | 310.61 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 457 | 311.12 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 588 | 312.44 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 685 | 313.36 | temperature | 10 | 1440 | > th | dose dependent | rect. | 10 | 23 |
| 693 | 313.42 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 760 | 313.84 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 818 | 314.10 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 854 | 314.32 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 963 | 314.65 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 4 |
| 985 | 314.80 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |