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Os01g0607800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.7 (0.0251) R2 : 0.734
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.03 (0.0644) R2dC : 0.582 R2C : 0.543
β3 : -1.06 (0.0944) R2dE : 0.0766 R2E : -0.0373
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.761 (0.0539) R2dN8 : 0.158 R2N8 : 0.0833
σ : 0.469
deviance : 101.29
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C
peak time of C : 19.5
E
wheather : precipitation
threshold : 0.7395
memory length : 13240
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
95.14 0.458 10.8 -0.255 2.01 -0.446 -1.35 -2.65 -0.744 19.6 0.2913 5421 -- --
97.02 0.459 10.7 -0.103 2.04 -0.938 -1.21 -- -0.726 19.5 0.8752 14528 -- --
100.19 0.466 10.8 -0.246 2.01 -0.434 -- -2.59 -0.752 19.6 0.3352 5412 -- --
101.39 0.469 10.7 -0.121 2.02 -0.943 -- -- -0.748 19.5 0.8458 14532 -- --
316.4 0.828 10.7 -0.247 -- -0.479 -- -2.68 -0.781 -- 0.2668 5411 -- --
118.18 0.51 10.7 -0.51 2.02 -- -1.31 -- -0.675 19.5 -- -- -- --
122.91 0.519 10.7 -0.48 2.01 -- -- -- -0.677 19.6 -- -- -- --
319.59 0.833 10.7 -0.164 -- -0.956 -- -- -0.809 -- 0.4765 11433 -- --
101.29 0.469 10.7 -- 2.03 -1.06 -- -- -0.761 19.5 0.7395 13240 -- --
340.21 0.862 10.7 -0.509 -- -- -- -- -0.708 -- -- -- -- --
128.98 0.531 10.7 -- 2.02 -- -- -- -0.624 19.5 -- -- -- --
320.2 0.833 10.7 -- -- -1.02 -- -- -0.806 -- 0.4901 11355 -- --
347.05 0.87 10.7 -- -- -- -- -- -0.652 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 88.38 atmosphere 995.0 10 > th dose dependent rect. 5 18
3 89.11 temperature 10.0 30 > th dose dependent rect. 7 22
13 91.46 temperature 30.0 30 < th dose dependent rect. 5 18
18 91.79 atmosphere 1000.0 30 > th dose dependent rect. 5 3
27 92.68 atmosphere 1000.0 30 > th dose independent rect. 5 18
29 92.72 temperature 30.0 90 < th dose dependent rect. 5 2
34 93.20 humidity 50.0 30 > th dose dependent rect. 5 18
40 93.49 temperature 10.0 270 > th dose dependent rect. 22 13
45 93.63 precipitation 0.1 90 < th dose independent rect. 7 22
46 93.63 precipitation 0.1 90 < th dose dependent rect. 7 22
47 93.65 temperature 30.0 90 < th dose independent rect. 4 19
51 93.84 atmosphere 1000.0 90 > th dose independent rect. 5 2
64 94.31 atmosphere 995.0 270 > th dose dependent rect. 3 3
67 94.37 temperature 30.0 90 < th dose dependent rect. 4 7
71 94.53 temperature 25.0 90 < th dose independent rect. 5 4
72 94.55 radiation 20.0 90 < th dose dependent rect. 5 2
73 94.61 temperature 30.0 10 < th dose dependent rect. 5 3
78 94.79 radiation 30.0 10 < th dose dependent rect. 5 3
79 94.80 temperature 25.0 90 < th dose independent rect. 5 2
90 95.03 radiation 20.0 10 < th dose independent rect. 5 3
91 95.05 temperature 30.0 90 < th dose dependent rect. 4 5
97 95.14 radiation 1.0 43200 < th dose dependent rect. 24 4
102 95.19 temperature 15.0 90 > th dose dependent rect. 23 5
107 95.23 radiation 20.0 90 < th dose dependent rect. 5 4
109 95.26 wind 9.0 90 < th dose independent rect. 7 22
111 95.27 wind 9.0 90 < th dose dependent rect. 7 22
117 95.39 temperature 10.0 10 > th dose dependent rect. 23 6
120 95.41 temperature 30.0 270 < th dose dependent rect. 1 20
121 95.42 temperature 30.0 10 < th dose dependent rect. 5 5
123 95.46 temperature 20.0 270 > th dose dependent rect. 23 2
126 95.50 precipitation 0.1 14400 > th dose dependent rect. 17 6
137 95.59 precipitation 0.1 4320 < th dose independent rect. 13 5
139 95.59 precipitation 0.1 4320 < th dose dependent rect. 13 5
141 95.64 precipitation 0.1 4320 > th dose independent rect. 13 5
161 95.81 humidity 50.0 90 > th dose dependent rect. 5 2
163 95.82 precipitation 0.1 4320 < th dose independent rect. 9 9
165 95.82 precipitation 0.1 4320 < th dose dependent rect. 9 9
166 95.83 precipitation 0.1 4320 > th dose dependent rect. 4 15
173 95.88 humidity 70.0 90 > th dose independent rect. 5 2
180 95.91 wind 7.0 90 < th dose independent rect. 5 2
182 95.91 temperature 10.0 90 > th dose independent rect. 5 2
185 95.91 humidity 50.0 90 > th dose independent rect. 5 2
188 95.91 atmosphere 1015.0 90 < th dose independent rect. 5 2
190 95.91 temperature 10.0 90 > th dose independent rect. 7 22
193 95.93 precipitation 0.1 14400 > th dose independent rect. 17 5
201 95.96 precipitation 0.1 4320 > th dose dependent sin 23 NA
206 96.02 precipitation 0.1 14400 < th dose independent rect. 17 5
209 96.02 precipitation 0.1 14400 < th dose dependent rect. 17 5
211 96.03 precipitation 0.1 4320 > th dose independent rect. 6 12
215 96.04 atmosphere 1000.0 270 > th dose independent rect. 3 3
219 96.05 precipitation 0.1 90 < th dose independent rect. 5 2
221 96.05 precipitation 0.1 90 < th dose dependent rect. 5 2
229 96.11 humidity 70.0 10 > th dose independent rect. 5 3
245 96.17 precipitation 0.1 14400 > th dose dependent rect. 6 17
259 96.22 radiation 1.0 270 < th dose independent rect. 3 17
264 96.24 precipitation 0.1 4320 > th dose dependent rect. 13 6
265 96.24 precipitation 0.1 14400 > th dose dependent rect. 8 15
276 96.33 precipitation 0.1 14400 > th dose dependent rect. 14 9
296 96.40 wind 5.0 14400 > th dose independent rect. 20 1
299 96.41 wind 5.0 270 < th dose independent rect. 23 2
304 96.44 precipitation 0.1 4320 > th dose independent rect. 4 14
318 96.48 precipitation 0.1 4320 > th dose dependent rect. 9 10
322 96.49 precipitation 0.1 14400 > th dose dependent rect. 17 2
324 96.49 temperature 30.0 30 < th dose dependent rect. 5 13
338 96.53 wind 9.0 30 < th dose dependent rect. 23 6
343 96.53 precipitation 0.1 4320 > th dose dependent rect. 22 20
344 96.54 wind 5.0 90 < th dose independent rect. 23 5
346 96.54 precipitation 0.1 4320 < th dose independent rect. 4 14
349 96.54 precipitation 0.1 4320 < th dose dependent rect. 4 14
353 96.55 wind 5.0 14400 < th dose independent rect. 20 1
355 96.55 temperature 25.0 90 < th dose independent rect. 4 7
358 96.55 radiation 20.0 270 < th dose dependent rect. 16 15
402 96.68 temperature 30.0 270 < th dose independent rect. 2 18
410 96.69 radiation 40.0 1440 < th dose dependent rect. 24 5
469 96.88 precipitation 0.1 14400 > th dose independent rect. 17 2
475 96.89 temperature 25.0 270 > th dose independent rect. 22 11
488 96.95 precipitation 0.1 14400 < th dose independent rect. 17 2
489 96.95 precipitation 0.1 14400 < th dose dependent rect. 17 2
522 97.09 wind 9.0 90 < th dose dependent rect. 5 2
536 97.16 radiation 20.0 90 < th dose dependent rect. 5 6
577 97.28 radiation 1.0 270 < th dose dependent rect. 3 17
617 97.35 precipitation 0.1 14400 > th dose independent rect. 6 17
621 97.36 wind 1.0 270 > th dose independent rect. 3 3
630 97.37 temperature 30.0 270 < th dose dependent rect. 2 7
665 97.44 radiation 1.0 270 < th dose dependent rect. 4 15
671 97.46 precipitation 0.1 14400 < th dose independent rect. 6 17
673 97.46 precipitation 0.1 14400 < th dose dependent rect. 6 17
682 97.48 precipitation 0.1 14400 > th dose independent rect. 8 15
686 97.49 precipitation 0.1 10 < th dose independent rect. 23 6
688 97.49 precipitation 0.1 10 < th dose dependent rect. 23 6
696 97.50 precipitation 0.1 720 < th dose independent rect. 15 18
700 97.50 precipitation 0.1 720 < th dose dependent rect. 15 18
708 97.52 precipitation 0.1 14400 < th dose independent rect. 8 15
712 97.52 precipitation 0.1 14400 < th dose dependent rect. 8 15
762 97.61 humidity 80.0 90 > th dose independent rect. 23 5
785 97.65 humidity 80.0 30 > th dose independent rect. 5 5
820 97.72 humidity 70.0 30 > th dose dependent rect. 5 5
832 97.76 wind 1.0 90 > th dose independent rect. 5 2
836 97.76 radiation 20.0 270 < th dose dependent rect. 3 6
898 97.87 temperature 20.0 14400 < th dose independent rect. 21 1
925 97.94 temperature 30.0 90 < th dose dependent rect. 4 11
935 97.96 temperature 30.0 90 < th dose dependent rect. 4 9
941 97.98 radiation 10.0 270 < th dose independent rect. 16 15
943 97.99 temperature 20.0 14400 > th dose independent rect. 21 1
956 98.01 wind 9.0 270 < th dose dependent rect. 23 2
982 98.06 radiation 40.0 90 < th dose dependent rect. 4 19