Os01g0606100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Quinonprotein alcohol dehydrogenase-like domain containing protein.
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Os01g0606100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Quinonprotein alcohol dehydrogenase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58.47 | 0.359 | 11.5 | 0.263 | 0.775 | 1.79 | 0.129 | 3.56 | 0.0991 | 21 | 0.1704 | 1372 | -- | -- |
| 61.67 | 0.366 | 11.5 | 0.531 | 1.36 | 1.5 | -0.4 | -- | 0.143 | 20.4 | 0.1693 | 1084 | -- | -- |
| 58.51 | 0.356 | 11.5 | 0.27 | 0.769 | 1.75 | -- | 3.41 | 0.0995 | 21 | 0.1705 | 1372 | -- | -- |
| 61.66 | 0.366 | 11.5 | 0.546 | 1.37 | 1.54 | -- | -- | 0.151 | 20.5 | 0.1699 | 1097 | -- | -- |
| 75.69 | 0.405 | 11.5 | 0.257 | -- | 1.78 | -- | 3.4 | 0.0824 | -- | 0.2025 | 1466 | -- | -- |
| 71.36 | 0.396 | 11.4 | 0.297 | 0.54 | -- | -0.387 | -- | 0.0565 | 20.1 | -- | -- | -- | -- |
| 71.76 | 0.397 | 11.4 | 0.309 | 0.544 | -- | -- | -- | 0.0569 | 19.9 | -- | -- | -- | -- |
| 78.76 | 0.413 | 11.4 | 0.276 | -- | 1.24 | -- | -- | 0.191 | -- | 2.812 | 1487 | -- | -- |
| 68.34 | 0.385 | 11.5 | -- | 1.35 | 1.34 | -- | -- | 0.0945 | 20.4 | 1.209 | 1075 | -- | -- |
| 87.87 | 0.438 | 11.4 | 0.304 | -- | -- | -- | -- | 0.0497 | -- | -- | -- | -- | -- |
| 74.28 | 0.403 | 11.5 | -- | 0.542 | -- | -- | -- | 0.0225 | 20 | -- | -- | -- | -- |
| 81.13 | 0.42 | 11.4 | -- | -- | 0.852 | -- | -- | 0.159 | -- | 3.225 | 1500 | -- | -- |
| 90.3 | 0.444 | 11.4 | -- | -- | -- | -- | -- | 0.0161 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.34 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 21 |
| 2 | 59.72 | radiation | 1 | 720 | < th | dose independent | sin | 16 | NA |
| 8 | 59.85 | temperature | 25 | 90 | < th | dose independent | rect. | 12 | 17 |
| 10 | 59.94 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 15 |
| 11 | 59.97 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 17 |
| 12 | 59.99 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 13 |
| 13 | 60.00 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 4 |
| 42 | 60.28 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 8 |
| 49 | 60.32 | radiation | 1 | 720 | < th | dose dependent | rect. | 4 | 14 |
| 59 | 60.43 | radiation | 1 | 720 | < th | dose dependent | sin | 15 | NA |
| 63 | 60.45 | radiation | 1 | 720 | < th | dose dependent | sin | 20 | NA |
| 82 | 60.61 | radiation | 1 | 720 | < th | dose dependent | rect. | 11 | 19 |
| 83 | 60.62 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 16 |
| 86 | 60.63 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 4 |
| 92 | 60.67 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 19 |
| 102 | 60.74 | radiation | 1 | 720 | < th | dose dependent | rect. | 11 | 15 |
| 105 | 60.75 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 17 |
| 129 | 60.87 | humidity | 80 | 1440 | < th | dose independent | sin | 4 | NA |
| 133 | 60.88 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 10 |
| 146 | 60.88 | radiation | 1 | 720 | < th | dose dependent | rect. | 11 | 7 |
| 177 | 60.98 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 21 |
| 204 | 61.06 | radiation | 1 | 270 | < th | dose independent | rect. | 21 | 21 |
| 236 | 61.15 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 13 |
| 248 | 61.19 | humidity | 90 | 720 | < th | dose dependent | rect. | 16 | 15 |
| 332 | 61.33 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 15 |
| 343 | 61.35 | humidity | 80 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 362 | 61.40 | temperature | 25 | 270 | > th | dose independent | rect. | 16 | 8 |
| 370 | 61.41 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 14 |
| 372 | 61.41 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 374 | 61.41 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 18 |
| 424 | 61.50 | radiation | 1 | 720 | > th | dose independent | sin | 17 | NA |
| 469 | 61.58 | radiation | 30 | 4320 | < th | dose dependent | rect. | 19 | 10 |
| 475 | 61.60 | humidity | 80 | 1440 | > th | dose independent | sin | 3 | NA |
| 479 | 61.60 | humidity | 90 | 720 | < th | dose dependent | sin | 12 | NA |
| 504 | 61.66 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 557 | 61.70 | wind | 5 | 720 | > th | dose dependent | rect. | 17 | 1 |
| 563 | 61.71 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 12 |
| 588 | 61.75 | humidity | 80 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 611 | 61.76 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 627 | 61.77 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 21 |
| 629 | 61.78 | humidity | 80 | 14400 | < th | dose independent | rect. | 20 | 2 |
| 630 | 61.78 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 3 |
| 682 | 61.84 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 17 |
| 683 | 61.84 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 19 |
| 686 | 61.85 | humidity | 80 | 720 | < th | dose independent | rect. | 13 | 18 |
| 704 | 61.87 | radiation | 30 | 14400 | < th | dose independent | rect. | 15 | 9 |
| 718 | 61.88 | radiation | 30 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 773 | 61.90 | radiation | 1 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 780 | 61.91 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 836 | 61.97 | humidity | 80 | 720 | < th | dose independent | rect. | 14 | 15 |
| 850 | 61.98 | radiation | 20 | 4320 | < th | dose dependent | rect. | 21 | 8 |
| 931 | 62.05 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 20 |
| 954 | 62.08 | humidity | 80 | 720 | < th | dose independent | sin | 15 | NA |
| 959 | 62.08 | radiation | 40 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 967 | 62.08 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 8 |
| 976 | 62.08 | temperature | 25 | 720 | > th | dose dependent | rect. | 10 | 13 |