Os01g0605100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to BCS1 protein-like protein.
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Os01g0605100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to BCS1 protein-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 252.67 | 0.747 | 8.27 | -1.92 | 0.71 | -1.65 | 0.793 | 0.785 | 0.0285 | 0.139 | 1.68 | 1450 | -- | -- |
| 253.23 | 0.741 | 8.27 | -1.81 | 0.742 | -1.68 | 0.821 | -- | 0.0316 | 0.099 | 1.779 | 1459 | -- | -- |
| 254.85 | 0.744 | 8.27 | -1.98 | 0.756 | -1.71 | -- | 0.987 | 0.0277 | 0.0093 | 1.777 | 1462 | -- | -- |
| 256.07 | 0.745 | 8.27 | -1.84 | 0.74 | -1.7 | -- | -- | 0.032 | 23.9 | 1.775 | 1459 | -- | -- |
| 265.43 | 0.759 | 8.24 | -1.95 | -- | -1.62 | -- | 0.972 | 0.063 | -- | 1.916 | 1347 | -- | -- |
| 295.72 | 0.806 | 8.2 | -1.54 | 0.658 | -- | 1.09 | -- | 0.306 | 0.424 | -- | -- | -- | -- |
| 300.68 | 0.812 | 8.2 | -1.58 | 0.655 | -- | -- | -- | 0.302 | 0.154 | -- | -- | -- | -- |
| 263.49 | 0.756 | 8.24 | -1.82 | -- | -1.85 | -- | -- | 0.0568 | -- | 1.82 | 1339 | -- | -- |
| 341.7 | 0.861 | 8.25 | -- | 0.801 | -1.27 | -- | -- | 0.236 | 23.9 | 2.14 | 1491 | -- | -- |
| 327.72 | 0.846 | 8.19 | -1.56 | -- | -- | -- | -- | 0.311 | -- | -- | -- | -- | -- |
| 366.19 | 0.895 | 8.16 | -- | 0.634 | -- | -- | -- | 0.477 | 0.0182 | -- | -- | -- | -- |
| 348.4 | 0.869 | 8.19 | -- | -- | -1.45 | -- | -- | 0.291 | -- | 2.149 | 1308 | -- | -- |
| 391.54 | 0.924 | 8.15 | -- | -- | -- | -- | -- | 0.484 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 252.33 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 4 | 13 |
| 5 | 252.37 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 4 | 13 |
| 15 | 252.38 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 23 | 18 |
| 19 | 252.44 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 19 | 22 |
| 49 | 256.11 | radiation | 1.0 | 1440 | < th | dose independent | sin | 2 | NA |
| 52 | 256.25 | radiation | 1.0 | 1440 | > th | dose independent | sin | 2 | NA |
| 53 | 256.30 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 5 | 12 |
| 59 | 256.61 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 22 | 19 |
| 63 | 256.68 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 19 | 22 |
| 111 | 259.32 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 112 | 259.40 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 116 | 259.51 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 4 | 16 |
| 159 | 259.63 | radiation | 1.0 | 1440 | < th | dose independent | no | NA | NA |
| 177 | 259.70 | radiation | 1.0 | 1440 | > th | dose independent | no | NA | NA |
| 251 | 259.82 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 1 |
| 263 | 259.82 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 1 |
| 292 | 260.65 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 2 | NA |
| 302 | 260.82 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 7 | 23 |
| 303 | 260.83 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 7 | 23 |
| 312 | 261.05 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 14 | 2 |
| 361 | 261.95 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 6 | 18 |
| 388 | 262.35 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 23 | 17 |
| 389 | 262.39 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 5 |
| 396 | 262.69 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 24 | 4 |
| 403 | 262.77 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 11 | 5 |
| 411 | 262.99 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 494 | 264.23 | humidity | 60.0 | 1440 | > th | dose dependent | sin | 4 | NA |
| 515 | 264.45 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 517 | 264.45 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 528 | 264.50 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 4 | 12 |
| 532 | 264.51 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 6 | 10 |
| 534 | 264.51 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 23 | 17 |
| 567 | 264.66 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 23 |
| 616 | 264.79 | radiation | 1.0 | 1440 | < th | dose dependent | no | NA | NA |
| 632 | 264.88 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 634 | 264.90 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 16 | 1 |
| 661 | 265.02 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 685 | 265.18 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 764 | 265.56 | radiation | 1.0 | 1440 | < th | dose independent | sin | 12 | NA |
| 772 | 265.63 | radiation | 1.0 | 1440 | > th | dose independent | sin | 12 | NA |
| 827 | 266.03 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 834 | 266.06 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 9 | 6 |
| 849 | 266.20 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 14 | 3 |
| 853 | 266.22 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 14 | 3 |
| 876 | 266.40 | humidity | 70.0 | 1440 | > th | dose independent | sin | 1 | NA |
| 889 | 266.48 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 8 |
| 894 | 266.50 | radiation | 1.0 | 720 | < th | dose independent | rect. | 5 | 6 |
| 901 | 266.54 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 1 | 4 |
| 906 | 266.57 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 8 |