Os01g0605000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0605000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 116.44 | 0.507 | 6.07 | 0.671 | 0.807 | -1.82 | -0.288 | 1.18 | 0.31 | 20.3 | 15 | 647 | -- | -- |
| 117.69 | 0.505 | 6.09 | 0.525 | 0.76 | -1.75 | -0.0758 | -- | 0.273 | 20.8 | 14.89 | 767 | -- | -- |
| 116.68 | 0.503 | 6.07 | 0.654 | 0.802 | -1.81 | -- | 1.1 | 0.306 | 20.2 | 14.9 | 645 | -- | -- |
| 117.31 | 0.504 | 6.09 | 0.471 | 0.811 | -1.82 | -- | -- | 0.255 | 20.3 | 14.7 | 645 | -- | -- |
| 125.8 | 0.522 | 6.03 | 0.808 | -- | -1.5 | -- | 1.39 | 0.33 | -- | 3.479 | 1465 | -- | -- |
| 158.05 | 0.589 | 6.14 | 0.0164 | 0.359 | -- | -0.24 | -- | -0.0243 | 20.6 | -- | -- | -- | -- |
| 158.23 | 0.589 | 6.14 | 0.0236 | 0.359 | -- | -- | -- | -0.0246 | 20.8 | -- | -- | -- | -- |
| 127.45 | 0.526 | 6.07 | 0.5 | -- | -1.49 | -- | -- | 0.249 | -- | 8.87 | 1473 | -- | -- |
| 122.44 | 0.515 | 6.11 | -- | 0.768 | -1.64 | -- | -- | 0.177 | 20.1 | 13.48 | 592 | -- | -- |
| 165.54 | 0.601 | 6.13 | 0.0231 | -- | -- | -- | -- | -0.0275 | -- | -- | -- | -- | -- |
| 158.25 | 0.588 | 6.14 | -- | 0.359 | -- | -- | -- | -0.0273 | 20.8 | -- | -- | -- | -- |
| 133.14 | 0.537 | 6.09 | -- | -- | -1.28 | -- | -- | 0.161 | -- | 8.807 | 1458 | -- | -- |
| 165.56 | 0.601 | 6.13 | -- | -- | -- | -- | -- | -0.03 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 112.60 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 18 |
| 5 | 113.23 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 8 | 113.38 | wind | 5 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 9 | 113.39 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 12 | 113.47 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 11 |
| 14 | 113.51 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 4 |
| 15 | 113.51 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 16 | 113.54 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 20 | 113.63 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 4 |
| 21 | 113.63 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 6 |
| 25 | 113.66 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 22 |
| 47 | 114.20 | temperature | 15 | 720 | > th | dose dependent | sin | 11 | NA |
| 48 | 114.23 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 9 |
| 50 | 114.26 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 51 | 114.27 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 11 |
| 59 | 114.43 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 17 |
| 87 | 114.79 | wind | 5 | 43200 | > th | dose dependent | rect. | 18 | 22 |
| 95 | 114.84 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 102 | 114.96 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 108 | 115.05 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 118 | 115.11 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 13 |
| 125 | 115.17 | wind | 7 | 43200 | < th | dose independent | rect. | 18 | 22 |
| 131 | 115.23 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 21 |
| 143 | 115.31 | wind | 7 | 43200 | > th | dose dependent | sin | 13 | NA |
| 161 | 115.40 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 8 |
| 163 | 115.41 | wind | 9 | 43200 | < th | dose independent | sin | 13 | NA |
| 190 | 115.55 | wind | 9 | 43200 | > th | dose dependent | rect. | 14 | 17 |
| 214 | 115.66 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 22 |
| 217 | 115.67 | wind | 9 | 43200 | > th | dose independent | sin | 13 | NA |
| 232 | 115.72 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 22 |
| 233 | 115.72 | wind | 5 | 43200 | > th | dose dependent | no | NA | NA |
| 234 | 115.72 | wind | 5 | 43200 | > th | dose dependent | rect. | 2 | 23 |
| 268 | 115.84 | temperature | 30 | 720 | < th | dose dependent | sin | 11 | NA |
| 281 | 115.87 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 23 |
| 384 | 116.17 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 23 |
| 483 | 116.50 | wind | 9 | 43200 | < th | dose independent | rect. | 14 | 18 |
| 497 | 116.55 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 23 |
| 499 | 116.56 | wind | 7 | 43200 | > th | dose independent | no | NA | NA |
| 500 | 116.56 | wind | 7 | 43200 | < th | dose independent | no | NA | NA |
| 502 | 116.56 | wind | 7 | 43200 | < th | dose independent | rect. | 6 | 23 |
| 506 | 116.57 | wind | 9 | 43200 | > th | dose independent | rect. | 14 | 18 |
| 508 | 116.57 | wind | 7 | 43200 | > th | dose independent | rect. | 2 | 23 |
| 509 | 116.57 | wind | 7 | 43200 | < th | dose independent | rect. | 2 | 23 |
| 533 | 116.63 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 545 | 116.64 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 560 | 116.68 | wind | 7 | 43200 | > th | dose independent | rect. | 4 | 23 |
| 561 | 116.68 | wind | 7 | 43200 | < th | dose independent | rect. | 4 | 23 |
| 606 | 116.77 | wind | 7 | 43200 | < th | dose independent | rect. | 8 | 23 |
| 607 | 116.77 | wind | 7 | 43200 | < th | dose independent | rect. | 23 | 23 |
| 613 | 116.78 | wind | 7 | 43200 | > th | dose independent | rect. | 8 | 23 |
| 615 | 116.78 | wind | 5 | 43200 | > th | dose dependent | rect. | 2 | 14 |
| 623 | 116.79 | wind | 5 | 43200 | > th | dose dependent | sin | 3 | NA |
| 626 | 116.81 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 23 |
| 627 | 116.81 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 23 |
| 650 | 116.86 | wind | 5 | 43200 | > th | dose independent | rect. | 23 | 17 |
| 657 | 116.88 | wind | 5 | 43200 | > th | dose independent | rect. | 3 | 13 |
| 666 | 116.89 | wind | 5 | 43200 | > th | dose independent | sin | 3 | NA |
| 674 | 116.91 | wind | 5 | 43200 | < th | dose independent | rect. | 19 | 6 |
| 679 | 116.92 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 717 | 116.97 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 755 | 117.03 | wind | 5 | 43200 | < th | dose independent | sin | 3 | NA |
| 785 | 117.09 | wind | 5 | 43200 | < th | dose independent | rect. | 2 | 14 |
| 799 | 117.12 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 10 |
| 902 | 117.26 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 918 | 117.29 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 10 |
| 972 | 117.36 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 16 |
| 997 | 117.40 | temperature | 20 | 1440 | > th | dose dependent | sin | 19 | NA |
| 998 | 117.40 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 11 |