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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0604900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.81 (0.0225) R2 : 0.0421
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.212 (0.0474) R2dN8 : 0.0544 R2N8 : 0.0421
σ : 0.424
deviance : 82.64
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
79.67 0.419 2.8 0.119 0.0605 0.118 -0.151 0.869 0.225 8.87 41.65 10 -- --
81.23 0.423 2.8 0.133 0.062 0.108 0.121 -- 0.229 9.69 41.65 10 -- --
79.7 0.419 2.8 0.121 0.0621 0.107 -- 0.775 0.227 8.73 41.65 10 -- --
81.22 0.42 2.8 0.135 0.0591 0.132 -- -- 0.227 8.58 41.38 14 -- --
79.91 0.419 2.8 0.121 -- 0.126 -- 0.778 0.228 -- 41.65 10 -- --
81.6 0.423 2.8 0.134 0.0867 -- 0.142 -- 0.228 10.3 -- -- -- --
81.67 0.423 2.8 0.139 0.0873 -- -- -- 0.228 9.89 -- -- -- --
81.35 0.42 2.8 0.146 -- 0.151 -- -- 0.224 -- 41.36 26 -- --
81.68 0.421 2.8 -- 0.0706 0.132 -- -- 0.215 8.66 41.35 26 -- --
82.13 0.423 2.8 0.138 -- -- -- -- 0.228 -- -- -- -- --
82.19 0.424 2.8 -- 0.0869 -- -- -- 0.212 9.77 -- -- -- --
81.85 0.421 2.81 -- -- 0.171 -- -- 0.216 -- 41.35 26 -- --
82.64 0.424 2.81 -- -- -- -- -- 0.212 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 73.72 wind 1.0 30 < th dose independent rect. 10 1
2 73.72 temperature 10.0 1440 > th dose independent rect. 11 1
6 73.72 atmosphere 995.0 1440 > th dose independent rect. 11 1
9 73.72 precipitation 0.1 1440 < th dose independent rect. 11 1
10 73.72 temperature 10.0 1440 > th dose independent rect. 12 23
13 73.72 wind 1.0 30 < th dose dependent rect. 10 1
14 73.72 precipitation 0.1 1440 < th dose dependent rect. 11 1
15 73.74 radiation 40.0 30 < th dose independent rect. 10 1
16 73.77 atmosphere 1005.0 30 > th dose dependent rect. 10 1
18 74.02 radiation 40.0 30 < th dose dependent rect. 10 1
19 74.06 temperature 25.0 30 > th dose dependent rect. 10 1
25 74.37 humidity 80.0 30 < th dose independent rect. 10 1
26 74.38 wind 7.0 30 < th dose dependent rect. 10 1
28 74.39 temperature 30.0 30 < th dose independent rect. 10 1
30 74.40 wind 5.0 30 < th dose independent rect. 10 1
33 74.40 temperature 10.0 30 > th dose independent rect. 10 1
35 74.40 humidity 50.0 30 > th dose independent rect. 10 1
37 74.40 atmosphere 995.0 30 > th dose independent rect. 10 1
38 74.40 atmosphere 1015.0 30 < th dose independent rect. 10 1
39 74.40 radiation 1.0 30 > th dose independent rect. 10 1
40 74.40 precipitation 0.1 30 < th dose independent rect. 10 1
41 74.40 temperature 10.0 30 > th dose independent rect. 11 23
42 74.40 precipitation 0.1 30 < th dose dependent rect. 10 1
45 74.42 temperature 25.0 30 > th dose independent rect. 10 1
46 74.42 atmosphere 1005.0 30 > th dose independent rect. 10 1
47 74.43 wind 1.0 30 > th dose independent rect. 10 1
52 74.48 humidity 90.0 30 < th dose dependent rect. 10 1
55 74.58 humidity 50.0 30 > th dose dependent rect. 10 1
59 74.87 radiation 1.0 30 > th dose dependent rect. 10 1
62 74.97 wind 1.0 30 > th dose dependent rect. 10 1
63 75.04 atmosphere 1015.0 30 < th dose dependent rect. 10 1
75 75.93 wind 9.0 30 < th dose independent rect. 11 23
111 76.97 atmosphere 995.0 30 > th dose independent rect. 11 23
113 77.28 precipitation 0.1 30 < th dose independent rect. 11 23
114 77.28 precipitation 0.1 30 < th dose dependent rect. 11 23
162 78.32 temperature 25.0 30 > th dose dependent rect. 8 3
163 78.41 temperature 25.0 30 > th dose independent rect. 4 1
167 78.48 temperature 25.0 270 > th dose independent rect. 7 1
168 78.49 wind 3.0 10 < th dose independent rect. 8 4
172 78.59 temperature 25.0 90 > th dose dependent rect. 4 1
174 78.66 humidity 90.0 10 < th dose independent rect. 4 1
178 78.73 temperature 25.0 90 > th dose dependent rect. 22 13
182 78.82 radiation 1.0 90 > th dose independent rect. 11 20
197 78.85 temperature 25.0 270 > th dose dependent rect. 7 1
200 78.86 wind 1.0 30 > th dose dependent rect. 4 1
202 78.87 temperature 25.0 90 > th dose dependent rect. 3 8
208 78.92 temperature 30.0 30 < th dose independent rect. 11 23
209 78.92 radiation 1.0 30 > th dose independent rect. 11 23
220 79.09 wind 5.0 10 < th dose dependent rect. 8 4
250 79.20 atmosphere 1005.0 90 > th dose independent rect. 8 3
254 79.23 temperature 25.0 30 > th dose independent rect. 8 3
275 79.28 radiation 20.0 30 > th dose independent rect. 8 4
283 79.31 atmosphere 1005.0 10 > th dose independent rect. 8 4
288 79.32 humidity 90.0 90 < th dose dependent rect. 7 4
289 79.32 atmosphere 1000.0 90 > th dose dependent rect. 7 4
299 79.36 humidity 50.0 30 > th dose independent rect. 11 23
322 79.37 atmosphere 1005.0 10 < th dose dependent rect. 18 3
328 79.38 wind 3.0 90 < th dose dependent rect. 18 1
329 79.38 atmosphere 1005.0 10 < th dose dependent rect. 20 1
345 79.42 radiation 20.0 30 > th dose independent rect. 15 21
356 79.44 wind 1.0 270 > th dose independent rect. 7 2
385 79.46 radiation 1.0 90 > th dose dependent rect. 7 4
395 79.48 wind 5.0 270 < th dose independent rect. 7 2
396 79.48 radiation 40.0 30 > th dose independent rect. 9 3
418 79.49 radiation 40.0 30 > th dose independent sin 7 NA
419 79.49 wind 1.0 270 < th dose independent rect. 16 1
424 79.49 wind 1.0 270 < th dose dependent rect. 16 1
425 79.49 temperature 10.0 30 > th dose dependent rect. 11 23
428 79.50 radiation 40.0 30 < th dose independent rect. 1 23
429 79.50 radiation 40.0 30 < th dose independent rect. 9 23
488 79.54 radiation 40.0 30 < th dose independent rect. 2 13
499 79.55 radiation 10.0 30 > th dose dependent rect. 15 21
560 79.59 radiation 40.0 30 < th dose independent sin 6 NA
561 79.59 temperature 30.0 270 < th dose independent rect. 7 2
562 79.59 radiation 40.0 270 < th dose independent rect. 7 2
612 79.62 radiation 40.0 30 < th dose independent rect. 11 23
613 79.62 radiation 40.0 30 < th dose independent rect. 21 23
614 79.62 humidity 80.0 10 < th dose dependent sin 7 NA
629 79.64 radiation 40.0 30 < th dose independent rect. 5 14
640 79.65 wind 9.0 270 < th dose independent rect. 9 22
651 79.66 temperature 10.0 270 > th dose independent rect. 7 2
653 79.66 humidity 50.0 270 > th dose independent rect. 7 2
655 79.66 atmosphere 1015.0 270 < th dose independent rect. 7 2
657 79.66 precipitation 0.1 270 < th dose independent rect. 7 2
661 79.66 temperature 10.0 270 > th dose independent rect. 9 22
662 79.66 temperature 10.0 90 > th dose dependent rect. 5 2
663 79.66 precipitation 0.1 270 < th dose dependent rect. 7 2
688 79.67 atmosphere 995.0 90 > th dose dependent rect. 5 2
697 79.68 radiation 1.0 90 > th dose independent rect. 5 2
727 79.68 temperature 10.0 30 > th dose dependent rect. 11 21
732 79.69 wind 7.0 10 < th dose independent rect. 12 20
764 79.72 radiation 20.0 30 < th dose independent sin 6 NA
765 79.72 wind 5.0 90 < th dose independent rect. 5 2
768 79.72 temperature 10.0 90 > th dose independent rect. 5 2
770 79.72 temperature 30.0 90 < th dose independent rect. 5 2
771 79.72 humidity 50.0 90 > th dose independent rect. 5 2
774 79.72 atmosphere 995.0 90 > th dose independent rect. 5 2
775 79.72 atmosphere 1015.0 90 < th dose independent rect. 5 2
776 79.72 radiation 20.0 90 < th dose independent rect. 5 2
779 79.72 precipitation 0.1 90 < th dose independent rect. 5 2
783 79.72 temperature 10.0 90 > th dose independent rect. 7 22
785 79.72 precipitation 0.1 90 < th dose dependent rect. 5 2
800 79.73 temperature 30.0 30 < th dose dependent rect. 10 1
843 79.75 wind 3.0 10 < th dose independent rect. 8 12
848 79.75 wind 3.0 10 < th dose independent rect. 8 18
851 79.75 wind 9.0 90 < th dose independent rect. 7 22
852 79.75 precipitation 0.1 90 < th dose independent rect. 7 22
855 79.75 precipitation 0.1 90 < th dose dependent rect. 7 22
861 79.76 wind 9.0 90 < th dose dependent rect. 5 2
881 79.77 radiation 20.0 30 > th dose independent sin 6 NA
886 79.77 wind 3.0 10 < th dose independent rect. 8 21
887 79.77 wind 9.0 90 < th dose independent rect. 11 21
913 79.78 wind 1.0 30 > th dose independent rect. 4 1
926 79.78 radiation 10.0 30 > th dose dependent sin 7 NA
961 79.79 wind 9.0 270 < th dose dependent rect. 7 2
964 79.79 wind 3.0 270 < th dose dependent rect. 16 3