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Os01g0604600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Carbohydrate kinase, FGGY family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.33 (0.0312) R2 : 0.66
β1 : 0.915 (0.115) R2dD : 0.0524 R2D : 0.0288
β2 : 1.48 (0.0782) R2dC : 0.27 R2C : 0.289
β3 : 1.57 (0.09) R2dE : 0.284 R2E : 0.318
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.251 (0.0717) R2dN8 : 0.015 R2N8 : 0.0615
σ : 0.568
deviance : 148.92
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C
peak time of C : 7.58
E
wheather : temperature
threshold : 22.3
memory length : 1256
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 8.53
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
145.45 0.567 6.3 1.13 1.49 1.59 1.03 -0.685 -0.184 7.52 22.21 1284 8.63 --
146.48 0.564 6.33 0.921 1.49 1.59 0.99 -- -0.251 7.48 22.2 1256 8.64 --
148.22 0.567 6.31 1.11 1.48 1.56 -- -0.573 -0.196 7.55 22.2 1256 8.2 --
148.92 0.568 6.33 0.915 1.48 1.57 -- -- -0.251 7.58 22.3 1256 8.53 --
232.35 0.71 6.37 1.02 -- 2.05 -- -0.143 -0.219 -- 21.9 747 4.05 --
246.04 0.735 6.44 0.43 1.56 -- 0.646 -- -0.78 7.91 -- -- -- --
247.23 0.736 6.44 0.448 1.56 -- -- -- -0.78 7.97 -- -- -- --
221.16 0.693 6.4 0.88 -- 2.06 -- -- -0.296 -- 24.6 692 4.22 --
169.17 0.606 6.36 -- 1.49 1.39 -- -- -0.398 7.57 22.4 1250 8.42 --
379.39 0.91 6.48 0.464 -- -- -- -- -0.76 -- -- -- -- --
252.52 0.743 6.45 -- 1.56 -- -- -- -0.83 7.95 -- -- -- --
216.91 0.686 6.51 -- -- 1.77 -- -- -0.639 -- 25.3 419 2.01 --
385.07 0.916 6.49 -- -- -- -- -- -0.812 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 152.23 temperature 30 270 < th dose dependent rect. 23 22
5 154.04 temperature 10 270 > th dose dependent sin 7 NA
6 154.10 temperature 20 270 > th dose dependent sin 8 NA
18 157.45 temperature 20 270 > th dose dependent rect. 17 22
21 157.83 temperature 30 270 < th dose dependent sin 7 NA
34 159.40 temperature 20 1440 > th dose dependent rect. 1 1
39 159.75 temperature 20 720 > th dose dependent rect. 20 14
41 159.84 temperature 30 720 < th dose dependent rect. 17 19
43 159.96 temperature 10 270 > th dose dependent rect. 4 23
87 161.95 temperature 25 4320 < th dose dependent rect. 21 1
110 162.50 temperature 30 720 < th dose dependent sin 10 NA
120 162.74 temperature 10 720 > th dose dependent rect. 15 18
124 162.82 temperature 20 1440 > th dose dependent rect. 18 11
139 162.94 temperature 30 270 < th dose dependent rect. 14 23
144 162.98 temperature 30 270 < th dose dependent rect. 12 23
152 163.04 temperature 30 270 < th dose dependent no NA NA
170 163.30 temperature 25 4320 < th dose dependent rect. 1 1
188 163.59 temperature 25 4320 < th dose dependent rect. 21 5
207 163.77 temperature 25 4320 < th dose dependent rect. 17 10
286 164.41 temperature 10 4320 > th dose dependent rect. 1 1
381 165.10 temperature 25 1440 < th dose dependent sin 15 NA
387 165.14 temperature 30 30 < th dose dependent rect. 3 23
452 165.47 temperature 10 4320 > th dose dependent rect. 21 6
641 166.42 temperature 25 720 < th dose dependent rect. 4 23
687 166.61 temperature 10 4320 > th dose dependent rect. 21 1
826 167.29 temperature 15 90 > th dose dependent no NA NA
830 167.29 temperature 10 720 > th dose dependent rect. 12 21