Os01g0604500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Flagellar calcium-binding protein (calflagin) family protein.
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Os01g0604500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Flagellar calcium-binding protein (calflagin) family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 188.53 | 0.645 | 6.55 | -1.12 | 1.92 | 2.05 | -0.449 | 1.29 | -0.00346 | 5.82 | 30.87 | 77 | -- | -- |
| 189.74 | 0.642 | 6.53 | -0.921 | 1.96 | 2.07 | -0.187 | -- | 0.0399 | 5.87 | 31.49 | 51 | -- | -- |
| 188.57 | 0.64 | 6.54 | -1.08 | 1.92 | 2.09 | -- | 1.1 | 0.0251 | 5.92 | 30.78 | 56 | -- | -- |
| 189.83 | 0.642 | 6.52 | -0.922 | 1.95 | 2.06 | -- | -- | 0.0437 | 5.87 | 31.25 | 51 | -- | -- |
| 323.53 | 0.838 | 6.54 | -0.753 | -- | 3.83 | -- | 1.42 | 0.184 | -- | 33.95 | 255 | -- | -- |
| 243.23 | 0.731 | 6.6 | -1.4 | 2.44 | -- | 0.128 | -- | -0.313 | 5.1 | -- | -- | -- | -- |
| 243.27 | 0.73 | 6.6 | -1.4 | 2.44 | -- | -- | -- | -0.314 | 5.1 | -- | -- | -- | -- |
| 325.01 | 0.84 | 6.51 | -0.511 | -- | 3.94 | -- | -- | 0.277 | -- | 46.47 | 253 | -- | -- |
| 209.76 | 0.675 | 6.49 | -- | 1.85 | 2.45 | -- | -- | 0.216 | 6.1 | 30.86 | 56 | -- | -- |
| 556.41 | 1.1 | 6.63 | -1.31 | -- | -- | -- | -- | -0.252 | -- | -- | -- | -- | -- |
| 294.82 | 0.803 | 6.57 | -- | 2.42 | -- | -- | -- | -0.158 | 5.12 | -- | -- | -- | -- |
| 331.27 | 0.848 | 6.49 | -- | -- | 4.06 | -- | -- | 0.36 | -- | 34.1 | 253 | -- | -- |
| 601.77 | 1.15 | 6.6 | -- | -- | -- | -- | -- | -0.106 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 183.04 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 3 | 185.05 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 4 | 185.12 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 8 | 185.82 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 11 | 186.50 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 13 | 186.70 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 17 | 186.94 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 19 | 187.15 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 20 |
| 22 | 187.43 | temperature | 20 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 30 | 187.84 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 34 | 188.12 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 48 | 189.02 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 49 | 189.03 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 53 | 189.16 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 59 | 189.30 | temperature | 20 | 30 | > th | dose dependent | no | NA | NA |
| 60 | 189.37 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 67 | 189.68 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 109 | 190.70 | temperature | 25 | 90 | > th | dose independent | rect. | 23 | 21 |
| 145 | 191.89 | temperature | 20 | 30 | > th | dose dependent | rect. | 2 | 23 |
| 157 | 192.23 | temperature | 25 | 270 | < th | dose independent | rect. | 8 | 22 |
| 161 | 192.45 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 204 | 193.46 | temperature | 25 | 270 | > th | dose independent | rect. | 10 | 23 |
| 230 | 194.02 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 244 | 194.25 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 21 |
| 267 | 194.79 | temperature | 20 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 289 | 195.08 | temperature | 25 | 90 | > th | dose independent | rect. | 13 | 23 |
| 319 | 195.67 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 23 |
| 334 | 195.94 | temperature | 20 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 344 | 196.02 | temperature | 25 | 270 | > th | dose independent | no | NA | NA |
| 352 | 196.10 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 18 |
| 354 | 196.12 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 23 |
| 357 | 196.16 | radiation | 1 | 720 | < th | dose independent | sin | 14 | NA |
| 387 | 196.59 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 16 |
| 395 | 196.72 | temperature | 20 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 399 | 196.82 | temperature | 25 | 270 | < th | dose independent | no | NA | NA |
| 405 | 196.90 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 407 | 196.95 | temperature | 25 | 90 | < th | dose independent | rect. | 11 | 20 |
| 411 | 197.00 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 15 |
| 437 | 197.25 | temperature | 25 | 270 | < th | dose independent | rect. | 13 | 23 |
| 448 | 197.42 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 22 |
| 452 | 197.46 | radiation | 1 | 720 | > th | dose independent | sin | 14 | NA |
| 517 | 198.17 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 21 |
| 523 | 198.22 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 6 |
| 546 | 198.53 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 12 |
| 552 | 198.56 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 5 |
| 560 | 198.69 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 5 |
| 583 | 198.87 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 15 |
| 588 | 198.89 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 17 |
| 645 | 199.39 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 675 | 199.59 | temperature | 25 | 720 | < th | dose independent | rect. | 8 | 14 |
| 682 | 199.64 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 13 |
| 706 | 199.80 | temperature | 20 | 30 | > th | dose dependent | rect. | 7 | 13 |
| 722 | 199.93 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 6 |
| 764 | 200.15 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 3 |
| 793 | 200.31 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 13 |
| 807 | 200.41 | radiation | 1 | 720 | < th | dose dependent | sin | 14 | NA |
| 832 | 200.58 | temperature | 30 | 30 | < th | dose dependent | sin | 20 | NA |
| 870 | 200.86 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 12 |
| 904 | 201.09 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 14 |
| 909 | 201.11 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 15 |
| 922 | 201.18 | temperature | 20 | 720 | > th | dose dependent | sin | 21 | NA |