Os01g0604300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0604300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 87.68 | 0.44 | 5.1 | 1.36 | 0.276 | -1.34 | -0.14 | -1.6 | 0.309 | 8.09 | 22 | 1656 | -- | -- |
| 93.65 | 0.451 | 5.15 | 0.937 | 0.291 | -1.2 | 0.133 | -- | 0.219 | 8.08 | 22.31 | 1817 | -- | -- |
| 87.73 | 0.436 | 5.1 | 1.35 | 0.278 | -1.34 | -- | -1.6 | 0.309 | 7.96 | 22 | 1656 | -- | -- |
| 93.28 | 0.45 | 5.16 | 0.89 | 0.311 | -1.22 | -- | -- | 0.18 | 8 | 22.5 | 1788 | -- | -- |
| 91.87 | 0.446 | 5.11 | 1.37 | -- | -1.34 | -- | -1.62 | 0.315 | -- | 22.08 | 1623 | -- | -- |
| 153.77 | 0.581 | 5.06 | 1.36 | 0.282 | -- | -0.0948 | -- | 0.614 | 7.95 | -- | -- | -- | -- |
| 153.8 | 0.581 | 5.06 | 1.36 | 0.283 | -- | -- | -- | 0.614 | 7.9 | -- | -- | -- | -- |
| 97.5 | 0.46 | 5.17 | 0.912 | -- | -1.25 | -- | -- | 0.186 | -- | 22.3 | 1620 | -- | -- |
| 105.2 | 0.478 | 5.23 | -- | 0.316 | -1.61 | -- | -- | 0.00839 | 8.06 | 21.7 | 4663 | -- | -- |
| 158.15 | 0.588 | 5.07 | 1.36 | -- | -- | -- | -- | 0.618 | -- | -- | -- | -- | -- |
| 202.4 | 0.665 | 5.1 | -- | 0.293 | -- | -- | -- | 0.463 | 7.57 | -- | -- | -- | -- |
| 108.09 | 0.484 | 5.21 | -- | -- | -1.64 | -- | -- | -0.0228 | -- | 21.6 | 7405 | -- | -- |
| 207.01 | 0.672 | 5.1 | -- | -- | -- | -- | -- | 0.467 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 87.97 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 2 | 88.10 | temperature | 25 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 3 | 88.22 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 4 |
| 9 | 88.46 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 20 |
| 10 | 88.48 | temperature | 25 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 16 | 88.75 | temperature | 10 | 1440 | > th | dose dependent | rect. | 22 | 1 |
| 18 | 88.78 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 40 | 89.14 | temperature | 25 | 270 | < th | dose dependent | rect. | 2 | 23 |
| 42 | 89.18 | temperature | 25 | 1440 | < th | dose dependent | rect. | 14 | 11 |
| 61 | 89.33 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 23 |
| 67 | 89.35 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 74 | 89.40 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 75 | 89.40 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 23 |
| 77 | 89.42 | temperature | 25 | 1440 | < th | dose dependent | sin | 16 | NA |
| 78 | 89.43 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 130 | 89.63 | temperature | 25 | 1440 | < th | dose dependent | rect. | 11 | 14 |
| 374 | 91.02 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 13 |
| 434 | 91.28 | temperature | 10 | 1440 | > th | dose dependent | sin | 12 | NA |
| 510 | 91.56 | temperature | 25 | 1440 | < th | dose dependent | sin | 5 | NA |
| 590 | 91.80 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 13 |
| 888 | 92.88 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 3 |
| 891 | 92.89 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 3 |