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Os01g0604100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : UspA domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.11 (0.0194) R2 : 0.478
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.942 (0.0465) R2dC : 0.473 R2C : 0.47
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0965 (0.0408) R2dN8 : 0.00826 R2N8 : 0.00506
σ : 0.366
deviance : 61.19
__
_____
C
peak time of C : 22.9
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
50.61 0.334 9.1 0.0722 0.585 0.483 0.147 -0.651 0.0859 22 19.02 8 -- --
52.28 0.337 9.11 0.0659 0.594 0.475 -0.0988 -- 0.0978 22.4 19.22 15 -- --
50.66 0.331 9.1 0.0742 0.585 0.478 -- -0.57 0.0854 22 18.82 7 -- --
52.37 0.337 9.1 0.103 0.586 0.477 -- -- 0.0914 22 19.02 7 -- --
61.81 0.366 9.09 0.13 -- 0.784 -- -0.509 0.0897 -- 15.96 12 -- --
60.39 0.364 9.11 0.0751 0.939 -- -0.372 -- 0.105 23 -- -- -- --
60.97 0.366 9.11 0.0905 0.941 -- -- -- 0.107 22.9 -- -- -- --
63.04 0.37 9.09 0.148 -- 0.778 -- -- 0.0949 -- 15.97 12 -- --
52.52 0.338 9.1 -- 0.584 0.481 -- -- 0.0794 22.1 19.22 5 -- --
116.05 0.503 9.08 0.111 -- -- -- -- 0.113 -- -- -- -- --
61.19 0.366 9.11 -- 0.942 -- -- -- 0.0965 22.9 -- -- -- --
62.47 0.368 9.09 -- -- 0.726 -- -- 0.0688 -- 8.801 6 -- --
116.38 0.504 9.08 -- -- -- -- -- 0.101 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 43.22 temperature 30.0 270 < th dose dependent rect. 7 3
11 45.51 temperature 15.0 720 > th dose dependent rect. 1 6
15 45.69 temperature 10.0 270 > th dose dependent rect. 2 15
16 45.84 temperature 25.0 270 < th dose independent rect. 7 4
22 46.05 radiation 40.0 10 < th dose dependent rect. 12 21
36 46.56 temperature 25.0 720 < th dose dependent rect. 24 7
50 46.82 temperature 25.0 720 < th dose dependent rect. 24 5
66 46.97 temperature 15.0 30 > th dose dependent rect. 3 6
79 47.12 humidity 80.0 270 > th dose independent rect. 1 6
83 47.15 temperature 25.0 720 < th dose dependent rect. 1 2
93 47.25 temperature 15.0 270 > th dose independent rect. 2 15
96 47.26 radiation 40.0 10 < th dose independent rect. 12 21
104 47.32 radiation 30.0 90 < th dose independent rect. 3 6
106 47.32 radiation 30.0 90 < th dose dependent rect. 3 14
119 47.44 humidity 70.0 90 > th dose independent rect. 3 6
120 47.44 radiation 20.0 90 < th dose independent rect. 3 14
136 47.58 radiation 40.0 90 < th dose dependent rect. 3 6
152 47.75 temperature 15.0 30 > th dose independent rect. 9 18
167 47.84 temperature 10.0 270 > th dose independent rect. 9 1
169 47.84 atmosphere 995.0 270 > th dose independent rect. 9 1
170 47.84 atmosphere 1015.0 270 < th dose independent rect. 9 1
171 47.84 temperature 10.0 270 > th dose independent rect. 10 23
181 47.91 humidity 50.0 270 > th dose independent rect. 9 1
189 47.98 radiation 1.0 10 > th dose independent rect. 9 5
192 48.02 temperature 10.0 270 > th dose independent rect. 6 6
193 48.02 atmosphere 995.0 270 > th dose independent rect. 6 6
194 48.02 atmosphere 1015.0 270 < th dose independent rect. 6 6
196 48.02 temperature 10.0 270 > th dose independent rect. 12 18
199 48.02 atmosphere 995.0 30 > th dose dependent rect. 9 18
209 48.05 precipitation 0.1 270 < th dose independent rect. 9 1
210 48.05 precipitation 0.1 270 < th dose dependent rect. 9 1
217 48.07 humidity 80.0 270 > th dose independent rect. 23 8
223 48.09 wind 9.0 270 < th dose independent rect. 9 1
228 48.12 precipitation 0.1 270 < th dose independent rect. 6 6
230 48.12 precipitation 0.1 270 < th dose dependent rect. 6 6
243 48.17 wind 1.0 270 > th dose independent rect. 12 18
244 48.18 wind 9.0 270 < th dose independent rect. 12 18
246 48.18 wind 9.0 270 < th dose independent rect. 11 20
251 48.20 radiation 20.0 10 < th dose independent rect. 3 17
252 48.21 precipitation 0.1 270 < th dose independent rect. 12 18
254 48.21 precipitation 0.1 270 < th dose dependent rect. 12 18
264 48.24 wind 1.0 90 > th dose independent rect. 3 6
276 48.27 humidity 50.0 270 > th dose independent rect. 6 6
279 48.28 radiation 10.0 270 < th dose independent rect. 1 7
280 48.28 atmosphere 995.0 270 > th dose dependent rect. 9 1
290 48.34 radiation 20.0 90 < th dose dependent sin 3 NA
299 48.37 wind 1.0 270 > th dose independent rect. 3 2
303 48.38 humidity 50.0 90 > th dose dependent rect. 3 6
314 48.41 radiation 20.0 10 < th dose independent rect. 3 15
319 48.43 wind 9.0 270 < th dose independent rect. 7 5
329 48.47 wind 9.0 270 < th dose independent rect. 10 23
349 48.53 wind 9.0 270 < th dose independent rect. 2 15
352 48.54 wind 1.0 270 > th dose independent rect. 7 5
353 48.54 atmosphere 995.0 30 > th dose independent rect. 9 18
366 48.57 radiation 10.0 270 < th dose independent rect. 17 9
368 48.57 precipitation 0.1 270 < th dose independent rect. 10 23
369 48.57 radiation 40.0 10 < th dose dependent rect. 3 15
370 48.57 precipitation 0.1 270 < th dose dependent rect. 10 23
375 48.59 radiation 30.0 10 < th dose dependent sin 3 NA
378 48.61 temperature 20.0 720 > th dose independent rect. 2 5
382 48.62 radiation 40.0 10 < th dose dependent rect. 3 6
393 48.64 atmosphere 995.0 30 > th dose dependent rect. 3 6
405 48.67 temperature 10.0 30 > th dose dependent rect. 3 17
416 48.71 radiation 40.0 10 < th dose dependent rect. 3 17
429 48.75 wind 1.0 270 > th dose independent rect. 9 1
430 48.75 wind 9.0 30 < th dose independent rect. 3 6
431 48.75 temperature 10.0 30 > th dose independent rect. 3 6
433 48.75 temperature 30.0 30 < th dose independent rect. 3 6
436 48.75 atmosphere 995.0 30 > th dose independent rect. 3 6
437 48.75 atmosphere 1015.0 30 < th dose independent rect. 3 6
448 48.76 humidity 50.0 270 > th dose dependent rect. 1 6
449 48.76 radiation 20.0 270 < th dose dependent rect. 1 6
471 48.79 radiation 40.0 10 < th dose independent rect. 3 17
472 48.79 atmosphere 995.0 270 > th dose independent rect. 12 19
481 48.81 precipitation 0.1 30 < th dose independent rect. 3 6
483 48.81 precipitation 0.1 30 < th dose dependent rect. 3 6
505 48.84 temperature 10.0 1440 > th dose independent rect. 4 6
509 48.84 atmosphere 995.0 1440 > th dose independent rect. 4 6
510 48.84 atmosphere 1015.0 1440 < th dose independent rect. 4 6
511 48.84 temperature 10.0 1440 > th dose independent rect. 10 18
515 48.85 precipitation 0.1 30 < th dose independent rect. 9 18
518 48.85 precipitation 0.1 30 < th dose dependent rect. 9 18
525 48.87 humidity 50.0 270 > th dose dependent rect. 23 8
533 48.89 temperature 10.0 10 > th dose independent rect. 9 5
535 48.89 atmosphere 995.0 10 > th dose independent rect. 9 5
536 48.89 atmosphere 1015.0 10 < th dose independent rect. 9 5
537 48.89 precipitation 0.1 10 < th dose independent rect. 9 5
538 48.89 temperature 10.0 10 > th dose independent rect. 14 19
540 48.89 precipitation 0.1 10 < th dose dependent rect. 9 5
554 48.94 atmosphere 995.0 270 > th dose independent rect. 17 9
563 48.95 radiation 40.0 90 < th dose independent rect. 3 15
572 48.97 radiation 20.0 90 < th dose independent sin 5 NA
581 48.98 wind 1.0 90 > th dose independent rect. 9 18
582 48.98 temperature 25.0 720 < th dose dependent sin 7 NA
592 48.99 atmosphere 995.0 10 > th dose dependent rect. 9 5
599 49.01 humidity 50.0 1440 > th dose independent rect. 4 6
603 49.01 temperature 20.0 720 < th dose independent rect. 24 9
607 49.02 wind 9.0 270 < th dose independent rect. 17 9
608 49.02 temperature 10.0 270 > th dose independent rect. 17 9
613 49.02 atmosphere 1015.0 270 < th dose independent rect. 2 15
618 49.03 humidity 50.0 270 > th dose independent rect. 17 9
654 49.06 atmosphere 995.0 270 > th dose independent rect. 7 18
656 49.06 precipitation 0.1 10 < th dose independent rect. 14 19
660 49.06 precipitation 0.1 10 < th dose dependent rect. 14 19
661 49.07 temperature 10.0 1440 > th dose independent rect. 10 4
664 49.07 atmosphere 995.0 1440 > th dose independent rect. 10 4
665 49.07 wind 9.0 270 < th dose independent rect. 1 6
666 49.07 temperature 10.0 270 > th dose independent rect. 1 6
668 49.07 temperature 30.0 270 < th dose independent rect. 1 6
669 49.07 humidity 50.0 270 > th dose independent rect. 1 6
671 49.07 atmosphere 995.0 270 > th dose independent rect. 1 6
672 49.07 atmosphere 1015.0 270 < th dose independent rect. 1 6
674 49.07 temperature 10.0 270 > th dose independent rect. 7 18
675 49.07 temperature 10.0 1440 > th dose independent rect. 14 20
680 49.07 radiation 40.0 270 < th dose dependent rect. 17 9
721 49.12 wind 9.0 30 < th dose independent rect. 13 20
753 49.16 wind 1.0 90 > th dose independent rect. 9 4
762 49.16 temperature 10.0 270 > th dose dependent rect. 18 7
770 49.17 precipitation 0.1 270 < th dose independent rect. 17 9
774 49.17 precipitation 0.1 270 < th dose dependent rect. 17 9
811 49.22 wind 1.0 270 > th dose independent rect. 1 6
840 49.25 precipitation 0.1 270 < th dose independent rect. 2 15
841 49.25 precipitation 0.1 270 < th dose dependent rect. 2 15
846 49.26 atmosphere 995.0 270 > th dose dependent rect. 7 5
848 49.26 radiation 10.0 270 < th dose dependent rect. 1 16
859 49.28 temperature 30.0 270 < th dose independent rect. 17 9
870 49.29 precipitation 0.1 270 < th dose independent rect. 1 6
872 49.29 wind 9.0 30 < th dose independent rect. 9 18
874 49.29 precipitation 0.1 270 < th dose dependent rect. 1 6
876 49.30 radiation 20.0 10 < th dose independent sin 4 NA
879 49.30 temperature 30.0 90 < th dose independent rect. 9 18
891 49.32 precipitation 0.1 270 < th dose independent rect. 7 18
892 49.32 atmosphere 1015.0 270 < th dose independent rect. 12 19
895 49.32 precipitation 0.1 270 < th dose dependent rect. 7 18
908 49.34 wind 1.0 30 > th dose independent rect. 13 20
933 49.38 temperature 10.0 10 > th dose dependent rect. 20 7
940 49.39 radiation 20.0 270 < th dose independent rect. 23 8
948 49.40 humidity 50.0 270 > th dose independent rect. 12 19
975 49.43 radiation 1.0 90 > th dose dependent rect. 7 7
996 49.45 radiation 20.0 10 < th dose independent rect. 23 23