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Os01g0603800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Triticum sp. (pAWJL3) leucine rich repeat region mRNA (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.4 (0.0482) R2 : 0.543
β1 : 0.114 (0.147) R2dD : 0.000691 R2D : -0.163
β2 : 0.767 (0.0877) R2dC : 0.072 R2C : -0.114
β3 : -11.3 (0.908) R2dE : 3.34 R2E : -1.38
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -23 (2.49) R2dD*E : 1.8 R2D*E : -2.99
γ1 : 0.387 (0.0752) R2dN8 : 0.038 R2N8 : -0.07
σ : 0.641
deviance : 189.58
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C
peak time of C : 4.09
E
wheather : radiation
threshold : 0.6634
memory length : 1089
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 9.01
open length of G : 8.02

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
187.08 0.643 9.4 0.151 0.748 -11.3 1.13 -23.1 0.384 4.2 0.7214 1097 9.05 8
315.76 0.834 9.66 1.34 0.62 -1.08 1.43 -- 0.596 4.67 0.7214 1097 9.05 8
189.58 0.641 9.4 0.114 0.767 -11.3 -- -23 0.387 4.09 0.6634 1089 9.01 8.02
219.42 0.69 9.74 0.875 0.69 -2.52 -- -- 0.264 5.51 2.458 1393 9.78 8.7
219.24 0.69 9.4 0.156 -- -11.2 -- -23 0.421 -- 0.6425 1094 9.02 8.02
318.37 0.836 9.66 1.39 0.649 -- 1.23 -- 0.61 4.67 -- -- -- --
322.29 0.841 9.66 1.38 0.66 -- -- -- 0.604 4.86 -- -- -- --
240.56 0.722 9.76 1.06 -- -2.49 -- -- 0.249 -- 2.935 1445 9.6 8.92
233.38 0.712 9.74 -- 0.729 -3.01 -- -- 0.14 4.73 1.43 1359 10.6 7.78
345.25 0.868 9.67 1.41 -- -- -- -- 0.621 -- -- -- -- --
372.53 0.903 9.7 -- 0.685 -- -- -- 0.45 4.8 -- -- -- --
257.75 0.748 9.77 -- -- -3.06 -- -- 0.137 -- 1.725 1451 10.6 7.78
397.33 0.93 9.7 -- -- -- -- -- 0.465 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 205.31 radiation 1 1440 < th dose dependent rect. 9 8
3 205.54 radiation 1 1440 < th dose dependent rect. 11 6
7 210.58 radiation 1 1440 < th dose independent rect. 11 19
8 210.92 radiation 1 1440 > th dose independent rect. 11 19
14 213.34 humidity 90 720 > th dose dependent rect. 20 1
24 215.59 radiation 1 1440 < th dose dependent sin 23 NA
25 215.60 humidity 90 720 > th dose dependent rect. 20 3
28 216.15 radiation 1 1440 < th dose independent sin 23 NA
31 216.41 radiation 1 1440 > th dose independent sin 23 NA
37 216.71 radiation 1 1440 < th dose independent rect. 11 16
39 216.85 radiation 1 1440 > th dose independent rect. 11 8
49 216.85 radiation 1 1440 < th dose dependent rect. 11 16
50 216.88 radiation 1 1440 < th dose independent rect. 11 14
53 216.93 radiation 1 1440 < th dose independent rect. 11 8
54 217.04 radiation 1 1440 < th dose independent rect. 11 12
56 217.04 radiation 1 1440 < th dose dependent rect. 11 14
65 217.29 radiation 1 1440 < th dose dependent rect. 11 12
113 218.11 radiation 1 1440 < th dose dependent rect. 5 12
153 218.70 humidity 90 720 > th dose dependent rect. 18 6
162 219.04 humidity 80 1440 < th dose independent rect. 6 9
178 219.57 radiation 1 1440 < th dose dependent rect. 22 19
187 219.71 radiation 1 1440 < th dose dependent rect. 24 17
210 219.90 radiation 1 1440 < th dose dependent rect. 2 15
212 219.96 radiation 1 1440 < th dose independent rect. 18 23
216 220.00 radiation 1 1440 > th dose independent rect. 18 23
223 220.10 humidity 80 1440 < th dose independent sin 2 NA
294 222.28 radiation 1 1440 < th dose independent rect. 5 22
315 222.40 radiation 1 1440 < th dose independent rect. 5 20
319 222.42 radiation 1 1440 < th dose independent rect. 5 14
321 222.48 radiation 1 1440 < th dose independent rect. 5 18
334 222.61 humidity 80 1440 > th dose independent rect. 6 11
343 222.66 radiation 1 1440 < th dose independent rect. 22 21
350 222.72 radiation 1 1440 < th dose independent rect. 24 19
361 222.77 radiation 1 1440 < th dose independent rect. 2 23
363 222.78 radiation 1 1440 < th dose independent no NA NA
364 222.78 radiation 1 1440 < th dose independent rect. 24 23
365 222.80 radiation 1 1440 < th dose independent rect. 2 17
379 222.85 radiation 1 1440 > th dose independent rect. 5 14
389 222.86 radiation 1 1440 < th dose independent rect. 2 21
431 223.28 radiation 1 1440 > th dose independent no NA NA
496 223.79 humidity 80 1440 > th dose independent sin 1 NA
498 223.85 radiation 1 1440 < th dose independent rect. 9 6
536 224.48 radiation 1 1440 < th dose independent rect. 5 12
538 224.49 radiation 1 1440 > th dose independent rect. 5 12
539 224.50 radiation 1 720 < th dose dependent rect. 5 21
583 225.06 radiation 1 1440 < th dose independent rect. 11 1
586 225.06 radiation 1 1440 < th dose dependent rect. 11 1
632 225.51 humidity 50 720 > th dose dependent rect. 17 8
713 226.44 radiation 1 1440 > th dose independent rect. 16 23
762 226.97 radiation 1 1440 > th dose independent rect. 13 2
797 227.34 radiation 1 1440 < th dose dependent no NA NA
798 227.34 radiation 1 1440 < th dose dependent rect. 2 23
799 227.34 radiation 1 1440 < th dose dependent rect. 24 23
805 227.40 radiation 1 1440 > th dose independent rect. 8 7
817 227.47 radiation 1 1440 < th dose dependent rect. 2 21
934 229.78 humidity 50 720 > th dose dependent sin 15 NA
959 230.50 wind 7 43200 > th dose independent rect. 12 1
973 230.87 humidity 70 720 > th dose dependent rect. 19 2