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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0603200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.06 (0.0297) R2 : 0.408
β1 : -0.766 (0.109) R2dD : 0.0666 R2D : 0.0646
β2 : 1.2 (0.0757) R2dC : 0.327 R2C : 0.32
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.165 (0.0635) R2dN8 : 0.0117 R2N8 : 0.0211
σ : 0.559
deviance : 142.61
__
_____
C
peak time of C : 4.02
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
127.18 0.53 4.06 -0.914 1.67 -0.799 -2.16 4.52 0.0774 4.79 11.05 826 -- --
140.44 0.552 4.05 -0.795 1.46 -0.499 0.0863 -- 0.15 4.53 9.62 880 -- --
124.29 0.519 4.08 -0.986 1.32 -0.758 -- 2.99 0.0118 5.09 12.13 1133 -- --
133.69 0.539 4.09 -0.662 1.22 -0.585 -- -- 0.0389 3.96 9.999 2889 -- --
201.22 0.664 4.06 -0.761 -- 0.394 -- -1.02 0.19 -- 12.13 1133 -- --
142.53 0.56 4.06 -0.768 1.2 -- -0.178 -- 0.164 3.98 -- -- -- --
142.61 0.559 4.06 -0.766 1.2 -- -- -- 0.165 4.02 -- -- -- --
167.6 0.603 4.09 -0.392 -- 1.34 -- -- 0.363 -- 0.004527 1969 -- --
146.51 0.564 4.08 -- 1.18 -0.623 -- -- 0.112 4.08 10 2874 -- --
221.25 0.695 4.06 -0.717 -- -- -- -- 0.197 -- -- -- -- --
158.07 0.588 4.04 -- 1.19 -- -- -- 0.25 4.03 -- -- -- --
167.25 0.602 4.06 -- -- 1.82 -- -- 0.287 -- 2.686e-07 1962 -- --
234.81 0.715 4.04 -- -- -- -- -- 0.276 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 122.68 radiation 30.0 1440 < th dose independent rect. 12 1
2 123.47 radiation 30.0 1440 > th dose independent rect. 12 1
5 124.29 radiation 40.0 1440 < th dose dependent rect. 12 1
6 124.46 radiation 10.0 1440 > th dose dependent rect. 12 1
12 125.37 temperature 25.0 720 < th dose independent rect. 19 1
16 125.79 humidity 60.0 720 > th dose independent rect. 15 17
32 127.00 wind 1.0 720 > th dose independent rect. 8 21
37 127.14 humidity 70.0 720 < th dose independent rect. 16 1
38 127.16 wind 1.0 720 > th dose independent rect. 8 7
43 127.34 humidity 50.0 43200 > th dose independent rect. 22 10
49 127.45 temperature 30.0 270 < th dose dependent rect. 4 8
51 127.46 radiation 40.0 720 < th dose independent rect. 15 17
55 127.50 radiation 40.0 720 < th dose dependent rect. 20 21
56 127.51 radiation 20.0 720 < th dose dependent rect. 20 21
62 127.60 temperature 15.0 720 > th dose independent rect. 8 7
63 127.60 radiation 30.0 1440 < th dose dependent rect. 8 6
66 127.64 temperature 25.0 270 < th dose independent rect. 16 12
70 127.68 radiation 1.0 720 > th dose dependent rect. 18 1
81 127.69 radiation 30.0 1440 < th dose independent rect. 8 6
87 127.72 humidity 90.0 720 < th dose dependent rect. 12 12
93 127.81 radiation 20.0 720 < th dose independent rect. 20 21
94 127.82 radiation 20.0 720 < th dose independent rect. 24 17
101 127.84 radiation 1.0 720 > th dose independent rect. 8 7
104 127.85 humidity 50.0 720 > th dose dependent rect. 20 21
107 127.88 humidity 90.0 720 < th dose independent rect. 8 7
109 127.91 humidity 80.0 720 < th dose dependent rect. 16 8
113 127.92 humidity 50.0 43200 > th dose independent rect. 24 8
115 127.94 precipitation 0.1 720 < th dose independent rect. 3 17
118 127.94 precipitation 0.1 720 < th dose dependent rect. 3 17
128 127.98 humidity 50.0 43200 < th dose independent rect. 3 5
137 128.00 wind 1.0 720 > th dose independent rect. 17 11
141 128.02 radiation 30.0 720 < th dose dependent rect. 24 17
170 128.13 humidity 80.0 720 < th dose dependent sin 14 NA
171 128.13 humidity 90.0 720 < th dose dependent sin 18 NA
172 128.13 humidity 90.0 720 < th dose dependent rect. 8 16
178 128.17 humidity 90.0 720 < th dose dependent rect. 12 8
180 128.17 radiation 10.0 1440 < th dose dependent rect. 7 9
198 128.24 temperature 25.0 270 < th dose independent rect. 4 8
225 128.34 humidity 60.0 720 > th dose independent sin 12 NA
280 128.48 humidity 60.0 720 > th dose independent rect. 20 21
282 128.48 humidity 90.0 720 < th dose dependent rect. 8 12
340 128.63 temperature 15.0 720 > th dose independent rect. 17 16
342 128.63 humidity 70.0 720 < th dose dependent rect. 16 1
354 128.65 radiation 20.0 720 < th dose dependent sin 3 NA
385 128.68 humidity 60.0 720 > th dose independent rect. 24 17
398 128.72 temperature 15.0 720 > th dose independent rect. 12 16
414 128.76 radiation 40.0 720 < th dose independent sin 13 NA
426 128.78 atmosphere 1015.0 720 < th dose independent rect. 3 17
432 128.79 temperature 30.0 90 < th dose dependent rect. 17 12
455 128.85 precipitation 0.1 720 < th dose independent sin 1 NA
459 128.85 precipitation 0.1 720 < th dose dependent sin 1 NA
476 128.89 radiation 30.0 1440 < th dose independent rect. 3 11
477 128.89 radiation 30.0 1440 < th dose independent rect. 1 13
493 128.90 humidity 50.0 720 > th dose dependent rect. 24 17
509 128.92 radiation 30.0 1440 < th dose independent rect. 21 17
531 128.94 radiation 30.0 1440 < th dose independent rect. 17 21
576 128.99 humidity 50.0 720 > th dose dependent rect. 4 12
601 129.03 temperature 15.0 720 > th dose independent rect. 3 17
608 129.04 humidity 50.0 43200 > th dose independent rect. 5 3
647 129.09 radiation 1.0 1440 > th dose dependent rect. 8 6
661 129.11 radiation 30.0 1440 < th dose dependent rect. 3 12
662 129.11 temperature 30.0 10 < th dose dependent rect. 18 13
664 129.11 humidity 50.0 720 > th dose dependent rect. 3 14
667 129.12 radiation 20.0 720 < th dose independent sin 4 NA
675 129.13 radiation 10.0 720 < th dose independent sin 13 NA
714 129.17 temperature 15.0 720 > th dose independent rect. 21 8
715 129.17 temperature 20.0 10 < th dose independent rect. 18 11
781 129.28 temperature 25.0 270 < th dose independent sin 14 NA
796 129.30 radiation 30.0 1440 < th dose independent rect. 11 11
800 129.30 humidity 80.0 720 > th dose independent rect. 19 20
801 129.30 humidity 50.0 720 > th dose dependent sin 2 NA
817 129.32 radiation 30.0 1440 < th dose independent rect. 11 17
827 129.32 humidity 50.0 720 > th dose dependent rect. 14 22
852 129.36 precipitation 0.1 720 < th dose independent rect. 8 7
859 129.36 precipitation 0.1 720 < th dose dependent rect. 8 7
886 129.38 temperature 30.0 90 < th dose dependent rect. 13 16
926 129.42 radiation 40.0 720 < th dose dependent rect. 14 18
964 129.46 temperature 15.0 720 > th dose independent rect. 16 13
976 129.47 temperature 10.0 720 > th dose dependent rect. 1 7
983 129.48 radiation 20.0 1440 > th dose independent rect. 8 6
984 129.48 temperature 15.0 720 > th dose independent rect. 8 12