Os01g0603100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os01g0603100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 362.35 | 0.894 | 3.61 | 0.975 | 1.01 | 1.83 | 0.00881 | -1.62 | 0.585 | 2.59 | 25.69 | 3688 | -- | -- |
| 363.02 | 0.887 | 3.64 | 0.719 | 1 | 1.94 | -0.0216 | -- | 0.551 | 2.3 | 24.9 | 3683 | -- | -- |
| 362.27 | 0.886 | 3.6 | 1.03 | 1 | 1.81 | -- | -1.79 | 0.588 | 2.58 | 25.7 | 3690 | -- | -- |
| 362.36 | 0.887 | 3.64 | 0.63 | 0.977 | 1.84 | -- | -- | 0.534 | 2.5 | 25 | 3650 | -- | -- |
| 410.26 | 0.943 | 3.59 | 0.977 | -- | 1.82 | -- | -1.54 | 0.643 | -- | 24.9 | 3391 | -- | -- |
| 442.22 | 0.986 | 3.74 | -0.0795 | 0.869 | -- | 0.178 | -- | 0.0971 | 3.43 | -- | -- | -- | -- |
| 442.32 | 0.985 | 3.74 | -0.0828 | 0.87 | -- | -- | -- | 0.0961 | 3.4 | -- | -- | -- | -- |
| 410.18 | 0.943 | 3.65 | 0.646 | -- | 1.81 | -- | -- | 0.551 | -- | 25 | 3428 | -- | -- |
| 370.18 | 0.896 | 3.67 | -- | 0.933 | 1.61 | -- | -- | 0.415 | 2.65 | 24.98 | 3554 | -- | -- |
| 484.83 | 1.03 | 3.74 | -0.046 | -- | -- | -- | -- | 0.119 | -- | -- | -- | -- | -- |
| 442.5 | 0.984 | 3.74 | -- | 0.868 | -- | -- | -- | 0.105 | 3.4 | -- | -- | -- | -- |
| 417.79 | 0.952 | 3.67 | -- | -- | 1.55 | -- | -- | 0.431 | -- | 25 | 3391 | -- | -- |
| 484.88 | 1.03 | 3.74 | -- | -- | -- | -- | -- | 0.124 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 360.52 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 10 |
| 7 | 361.32 | temperature | 20 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 21 | 362.05 | temperature | 20 | 1440 | > th | dose dependent | sin | 7 | NA |
| 54 | 362.89 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 3 |
| 64 | 363.00 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 9 |
| 151 | 363.84 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 166 | 363.95 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 3 |
| 180 | 364.00 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 18 |
| 192 | 364.06 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 2 |
| 197 | 364.07 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 205 | 364.13 | temperature | 25 | 4320 | < th | dose independent | rect. | 15 | 10 |
| 215 | 364.16 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 7 |
| 217 | 364.16 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 15 |
| 218 | 364.17 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 7 |
| 221 | 364.19 | temperature | 25 | 4320 | < th | dose independent | sin | 15 | NA |
| 223 | 364.20 | temperature | 25 | 4320 | > th | dose independent | rect. | 15 | 10 |
| 241 | 364.31 | temperature | 30 | 1440 | < th | dose dependent | sin | 5 | NA |
| 252 | 364.35 | temperature | 25 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 287 | 364.51 | temperature | 25 | 4320 | > th | dose independent | sin | 16 | NA |
| 388 | 364.91 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 20 |
| 488 | 365.22 | temperature | 30 | 1440 | < th | dose dependent | rect. | 14 | 21 |
| 496 | 365.25 | temperature | 25 | 4320 | > th | dose dependent | rect. | 14 | 7 |
| 497 | 365.25 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 13 |
| 507 | 365.27 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 21 |
| 600 | 365.47 | temperature | 25 | 4320 | < th | dose independent | rect. | 13 | 19 |
| 612 | 365.49 | temperature | 25 | 1440 | > th | dose independent | rect. | 14 | 21 |
| 627 | 365.51 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 15 |
| 644 | 365.54 | temperature | 20 | 1440 | > th | dose dependent | rect. | 8 | 23 |
| 670 | 365.61 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 697 | 365.68 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 20 |
| 706 | 365.70 | temperature | 25 | 4320 | > th | dose dependent | sin | 18 | NA |
| 715 | 365.72 | temperature | 25 | 4320 | > th | dose independent | rect. | 13 | 19 |
| 717 | 365.72 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 11 |
| 759 | 365.79 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 790 | 365.85 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 816 | 365.88 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 23 |
| 817 | 365.88 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 23 |
| 856 | 365.95 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 22 |
| 867 | 365.96 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 910 | 366.04 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 20 |
| 962 | 366.11 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 21 |