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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0602500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cytochrome P450 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.37 (0.0526) R2 : 0.416
β1 : 2.18 (0.192) R2dD : 0.171 R2D : 0.157
β2 : 1.7 (0.124) R2dC : 0.241 R2C : 0.244
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.384 (0.112) R2dN8 : 0.0202 R2N8 : -0.00329
σ : 0.988
deviance : 444.75
__
_____
C
peak time of C : 23.9
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
419.78 0.963 4.4 2.21 1.79 -0.673 1.33 -1.76 0.335 23.9 81 1337 -- --
423.12 0.958 4.37 2.33 1.68 -0.828 1.25 -- 0.379 23.6 84.57 1723 -- --
426.46 0.962 4.4 2.17 1.73 -0.634 -- -1.59 0.344 23.9 82.76 1504 -- --
429.66 0.965 4.38 2.28 1.68 -0.784 -- -- 0.368 23.6 84.35 1725 -- --
522.7 1.07 4.34 2.24 -- -1.9 -- -0.655 0.369 -- 89 1643 -- --
439.54 0.983 4.36 2.23 1.71 -- 1.11 -- 0.39 23.8 -- -- -- --
444.75 0.988 4.37 2.18 1.7 -- -- -- 0.384 23.9 -- -- -- --
523.51 1.07 4.34 2.25 -- -1.92 -- -- 0.369 -- 89 1643 -- --
548.21 1.09 4.37 -- 1.8 -1.11 -- -- 0.31 0.042 75.98 8509 -- --
627.58 1.17 4.33 2.23 -- -- -- -- 0.407 -- -- -- -- --
570.25 1.12 4.42 -- 1.73 -- -- -- 0.141 24 -- -- -- --
654.99 1.2 4.38 -- -- -1.92 -- -- 0.161 -- 93 4545 -- --
759.21 1.29 4.38 -- -- -- -- -- 0.159 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 405.75 wind 1.0 43200 < th dose dependent rect. 5 1
2 408.59 precipitation 0.1 14400 < th dose independent rect. 15 1
3 408.59 precipitation 0.1 14400 < th dose dependent rect. 15 1
4 408.62 precipitation 0.1 14400 > th dose independent rect. 15 1
5 408.62 precipitation 0.1 14400 > th dose dependent rect. 15 1
6 408.97 humidity 70.0 1440 > th dose dependent rect. 11 1
8 409.50 precipitation 0.1 14400 > th dose independent rect. 8 10
10 409.54 precipitation 0.1 14400 < th dose independent rect. 8 10
11 409.54 precipitation 0.1 14400 < th dose dependent rect. 8 10
13 409.62 precipitation 0.1 14400 > th dose independent rect. 15 3
19 409.83 precipitation 0.1 14400 < th dose independent rect. 15 3
20 409.83 precipitation 0.1 14400 < th dose dependent rect. 15 3
31 410.01 precipitation 0.1 14400 < th dose independent rect. 5 13
33 410.01 precipitation 0.1 14400 < th dose dependent rect. 5 13
49 410.17 wind 3.0 14400 < th dose dependent rect. 3 3
61 410.57 wind 1.0 43200 > th dose independent rect. 5 1
75 410.76 humidity 70.0 1440 > th dose dependent rect. 9 4
93 411.01 humidity 90.0 1440 < th dose dependent rect. 9 1
99 411.17 humidity 50.0 1440 > th dose dependent rect. 9 1
101 411.19 humidity 50.0 1440 > th dose dependent rect. 9 3
106 411.26 precipitation 0.1 14400 > th dose dependent rect. 5 14
109 411.27 humidity 90.0 1440 < th dose dependent rect. 9 3
113 411.39 wind 1.0 43200 < th dose independent rect. 5 2
116 411.44 humidity 80.0 1440 > th dose independent rect. 8 6
124 411.51 humidity 80.0 1440 < th dose independent rect. 8 6
129 411.59 humidity 70.0 1440 > th dose independent rect. 11 1
143 411.77 wind 1.0 14400 < th dose independent rect. 1 2
175 412.07 wind 1.0 270 < th dose dependent rect. 4 1
179 412.12 humidity 50.0 1440 < th dose dependent rect. 16 1
210 412.49 humidity 80.0 1440 > th dose independent rect. 10 3
218 412.57 wind 1.0 270 < th dose independent rect. 4 1
224 412.61 humidity 80.0 1440 < th dose independent rect. 10 3
225 412.63 humidity 50.0 1440 < th dose independent rect. 16 1
230 412.66 humidity 50.0 1440 > th dose independent rect. 16 1
248 412.90 wind 1.0 14400 > th dose independent rect. 1 2
251 412.94 precipitation 0.1 14400 > th dose dependent sin 0 NA
256 412.99 wind 3.0 14400 < th dose independent rect. 3 3
265 413.02 wind 1.0 90 < th dose dependent rect. 3 9
267 413.02 wind 1.0 90 < th dose dependent rect. 1 11
271 413.09 precipitation 0.1 14400 > th dose independent sin 0 NA
272 413.09 radiation 10.0 1440 < th dose independent rect. 8 3
273 413.10 precipitation 0.1 14400 < th dose independent sin 0 NA
275 413.10 precipitation 0.1 14400 < th dose dependent sin 0 NA
295 413.23 wind 1.0 90 < th dose independent rect. 3 9
297 413.24 wind 3.0 14400 > th dose independent rect. 3 3
357 413.75 precipitation 0.1 14400 > th dose dependent rect. 24 18
396 414.09 humidity 50.0 1440 < th dose independent rect. 15 21
416 414.21 humidity 50.0 1440 > th dose independent rect. 15 20
426 414.29 wind 1.0 14400 > th dose dependent rect. 4 2
431 414.32 wind 1.0 14400 < th dose independent rect. 1 4
445 414.43 atmosphere 1010.0 720 > th dose independent rect. 23 4
493 414.76 wind 1.0 14400 < th dose independent rect. 1 6
502 414.86 radiation 20.0 1440 < th dose dependent rect. 8 2
504 414.88 wind 1.0 270 < th dose dependent rect. 1 4
511 414.94 humidity 50.0 1440 > th dose independent rect. 14 22
534 415.08 humidity 50.0 1440 < th dose dependent rect. 15 21
535 415.09 wind 1.0 14400 > th dose independent rect. 1 6
578 415.36 humidity 60.0 14400 < th dose independent rect. 14 1
585 415.40 humidity 60.0 14400 < th dose independent rect. 14 22
592 415.44 wind 1.0 14400 > th dose independent rect. 1 4
643 415.66 humidity 80.0 1440 > th dose independent sin 2 NA
654 415.73 humidity 60.0 14400 < th dose dependent rect. 15 1
688 415.91 humidity 60.0 14400 > th dose independent rect. 14 22
711 416.03 humidity 60.0 14400 < th dose independent rect. 11 1
713 416.04 humidity 60.0 14400 > th dose independent rect. 15 1
718 416.05 humidity 80.0 1440 < th dose independent sin 2 NA
724 416.06 humidity 60.0 14400 < th dose dependent rect. 14 3
730 416.09 precipitation 0.1 14400 < th dose independent rect. 24 19
732 416.09 precipitation 0.1 14400 < th dose dependent rect. 24 19
739 416.12 radiation 20.0 30 < th dose independent rect. 8 20
766 416.23 humidity 60.0 14400 < th dose dependent rect. 14 20
785 416.31 humidity 50.0 1440 < th dose dependent sin 11 NA
794 416.36 humidity 50.0 1440 > th dose independent sin 11 NA
813 416.44 humidity 60.0 14400 < th dose dependent rect. 14 18
835 416.47 humidity 50.0 1440 < th dose independent sin 11 NA
843 416.51 humidity 50.0 1440 > th dose independent rect. 15 9
849 416.53 humidity 50.0 1440 > th dose independent rect. 15 6
850 416.53 radiation 20.0 30 < th dose independent rect. 8 6
858 416.55 wind 1.0 43200 < th dose dependent rect. 12 1
862 416.57 humidity 50.0 1440 > th dose independent rect. 15 11
883 416.63 humidity 50.0 1440 > th dose independent rect. 15 13
912 416.69 humidity 80.0 14400 > th dose independent rect. 6 1
921 416.70 humidity 90.0 1440 < th dose dependent sin 3 NA
932 416.72 radiation 1.0 1440 > th dose dependent rect. 8 2
933 416.72 precipitation 0.1 14400 > th dose dependent rect. 4 22
944 416.76 radiation 10.0 1440 > th dose independent rect. 8 3
973 416.82 atmosphere 1010.0 720 > th dose independent rect. 1 2
983 416.85 humidity 80.0 1440 < th dose dependent rect. 21 15