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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0601700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine rich repeat, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.77 (0.0361) R2 : 0.519
β1 : 1.01 (0.132) R2dD : 0.0638 R2D : 0.0616
β2 : 1.79 (0.0866) R2dC : 0.456 R2C : 0.456
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.135 (0.0769) R2dN8 : 0.00435 R2N8 : -0.00421
σ : 0.678
deviance : 209.47
__
_____
C
peak time of C : 22.5
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
190.67 0.649 4.75 0.906 1.78 -1.27 0.772 -2.07 -0.0233 22.4 23.41 4120 -- --
194.8 0.65 4.82 0.661 1.76 -0.846 0.839 -- -0.0651 22.4 25.1 3952 -- --
193.05 0.647 4.75 0.886 1.77 -1.26 -- -2.09 -0.0282 22.4 23.37 4079 -- --
197.46 0.654 4.81 0.658 1.75 -0.809 -- -- -0.0619 22.4 25.29 3990 -- --
364.95 0.89 4.72 1.06 -- -1.28 -- -1.91 0.00711 -- 29.7 2289 -- --
206.87 0.674 4.77 1.04 1.8 -- 0.801 -- 0.138 22.4 -- -- -- --
209.47 0.678 4.77 1.01 1.79 -- -- -- 0.135 22.5 -- -- -- --
336.2 0.854 4.77 0.536 -- -2.14 -- -- -0.155 -- 35 785 -- --
198.69 0.657 4.86 -- 1.77 -0.994 -- -- -0.273 22.4 92.2 44345 -- --
406.79 0.942 4.72 1.04 -- -- -- -- 0.142 -- -- -- -- --
236.22 0.719 4.79 -- 1.8 -- -- -- 0.0228 22.5 -- -- -- --
341.49 0.861 4.81 -- -- -2.31 -- -- -0.263 -- 42.8 779 -- --
435.23 0.974 4.75 -- -- -- -- -- 0.0269 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 184.15 temperature 25.0 270 < th dose independent rect. 16 10
4 185.09 temperature 25.0 270 > th dose independent rect. 16 14
8 185.45 wind 3.0 14400 < th dose dependent rect. 6 1
11 185.62 wind 1.0 14400 < th dose dependent rect. 1 1
16 185.94 wind 1.0 14400 < th dose dependent rect. 1 7
18 186.06 wind 1.0 14400 < th dose independent rect. 6 1
19 186.09 temperature 25.0 270 > th dose independent sin 13 NA
24 186.27 wind 1.0 14400 < th dose dependent rect. 23 9
29 186.45 wind 1.0 14400 > th dose independent rect. 6 1
32 186.50 wind 1.0 14400 < th dose dependent rect. 3 5
37 186.64 wind 1.0 14400 < th dose independent rect. 21 2
42 186.75 wind 1.0 14400 < th dose dependent rect. 1 3
53 186.92 wind 1.0 14400 < th dose dependent rect. 1 13
55 186.98 wind 1.0 14400 < th dose dependent rect. 1 11
60 187.11 wind 1.0 14400 < th dose dependent sin 7 NA
63 187.14 wind 1.0 14400 < th dose dependent rect. 20 12
66 187.20 wind 1.0 14400 < th dose independent rect. 23 10
83 187.31 wind 1.0 14400 < th dose dependent rect. 23 15
110 187.57 wind 1.0 14400 > th dose independent rect. 21 2
114 187.59 wind 1.0 14400 < th dose dependent rect. 3 9
115 187.59 wind 1.0 14400 < th dose dependent rect. 3 11
123 187.66 wind 1.0 14400 < th dose dependent rect. 16 16
127 187.69 humidity 90.0 43200 > th dose dependent rect. 4 2
134 187.75 wind 1.0 14400 < th dose dependent rect. 23 18
135 187.76 wind 1.0 14400 < th dose independent rect. 1 1
138 187.77 wind 1.0 14400 < th dose independent rect. 3 6
145 187.78 wind 1.0 14400 < th dose dependent rect. 20 18
160 187.89 wind 1.0 14400 > th dose independent rect. 1 8
178 188.02 humidity 90.0 43200 < th dose independent rect. 5 1
180 188.03 humidity 90.0 43200 > th dose independent rect. 4 2
196 188.10 humidity 90.0 43200 < th dose independent rect. 1 1
204 188.14 wind 1.0 14400 < th dose dependent rect. 20 21
228 188.26 wind 1.0 14400 > th dose independent rect. 22 10
231 188.27 wind 1.0 14400 > th dose independent rect. 3 6
236 188.29 wind 1.0 14400 < th dose independent rect. 24 4
238 188.30 wind 1.0 14400 < th dose independent sin 8 NA
252 188.35 wind 1.0 14400 < th dose dependent rect. 16 22
262 188.40 wind 1.0 14400 < th dose dependent rect. 1 20
306 188.63 wind 1.0 14400 < th dose independent rect. 16 17
307 188.64 atmosphere 1015.0 43200 < th dose independent rect. 23 1
309 188.65 atmosphere 1015.0 43200 > th dose independent rect. 23 1
313 188.66 wind 1.0 14400 < th dose dependent rect. 4 22
314 188.67 temperature 25.0 270 < th dose independent sin 15 NA
316 188.67 wind 1.0 14400 < th dose dependent rect. 12 21
328 188.70 wind 7.0 14400 > th dose independent rect. 23 2
367 188.82 precipitation 0.1 270 < th dose independent rect. 17 23
368 188.82 precipitation 0.1 270 < th dose dependent rect. 17 23
373 188.85 wind 1.0 14400 < th dose independent rect. 1 14
387 188.91 atmosphere 1015.0 43200 > th dose dependent rect. 3 1
390 188.92 humidity 90.0 43200 > th dose independent rect. 1 5
398 188.93 wind 1.0 14400 > th dose independent rect. 1 1
414 188.99 wind 1.0 14400 < th dose independent rect. 22 16
433 189.04 humidity 90.0 43200 < th dose independent rect. 3 4
434 189.04 humidity 90.0 43200 < th dose independent rect. 20 10
438 189.05 wind 1.0 14400 < th dose dependent no NA NA
448 189.06 wind 1.0 14400 < th dose independent rect. 20 18
453 189.07 temperature 20.0 270 > th dose dependent rect. 15 16
455 189.08 humidity 90.0 43200 < th dose independent rect. 1 6
463 189.09 temperature 20.0 90 > th dose dependent rect. 17 14
468 189.11 humidity 90.0 43200 > th dose independent rect. 1 1
511 189.22 wind 1.0 14400 < th dose dependent rect. 4 19
517 189.23 wind 1.0 14400 < th dose independent rect. 12 21
534 189.26 wind 1.0 14400 < th dose independent rect. 20 21
538 189.27 wind 1.0 14400 < th dose dependent rect. 21 2
550 189.30 precipitation 0.1 270 > th dose independent rect. 15 13
553 189.31 temperature 20.0 4320 > th dose independent rect. 22 1
588 189.37 humidity 50.0 270 > th dose independent sin 16 NA
610 189.40 wind 1.0 14400 < th dose independent rect. 4 22
616 189.41 wind 1.0 14400 < th dose independent rect. 4 11
635 189.45 humidity 90.0 43200 > th dose dependent rect. 1 1
637 189.46 wind 1.0 14400 > th dose independent sin 8 NA
638 189.46 wind 1.0 43200 < th dose independent rect. 12 1
643 189.47 temperature 20.0 10 > th dose dependent rect. 18 9
657 189.49 radiation 1.0 14400 > th dose independent rect. 15 1
676 189.52 temperature 20.0 4320 < th dose independent rect. 22 1
687 189.53 radiation 1.0 14400 < th dose independent rect. 15 1
690 189.53 wind 1.0 14400 < th dose dependent rect. 19 4
694 189.55 wind 1.0 14400 > th dose independent rect. 24 4
698 189.55 wind 1.0 14400 < th dose independent rect. 4 19
705 189.56 temperature 20.0 10 > th dose dependent rect. 18 7
706 189.56 temperature 20.0 10 > th dose dependent rect. 18 13
721 189.59 wind 1.0 14400 > th dose independent rect. 16 17
753 189.64 wind 1.0 14400 > th dose independent rect. 4 19
784 189.71 wind 1.0 14400 > th dose dependent rect. 6 1
806 189.74 temperature 20.0 10 > th dose dependent rect. 18 11
836 189.79 wind 1.0 14400 > th dose independent rect. 4 22
858 189.82 wind 1.0 14400 < th dose independent rect. 16 22
901 189.87 temperature 20.0 720 > th dose dependent rect. 23 12
907 189.88 wind 1.0 14400 > th dose independent rect. 20 18
950 189.94 wind 1.0 14400 > th dose independent rect. 1 14
952 189.94 wind 1.0 14400 > th dose independent rect. 20 21
977 189.96 wind 1.0 14400 > th dose independent rect. 12 21