Os01g0600200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0600200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.6 | 0.203 | 12.2 | -0.263 | 0.47 | 0.556 | -0.235 | -1.19 | 0.064 | 5.92 | 9.991 | 714 | -- | -- |
| 19.62 | 0.206 | 12.2 | -0.0769 | 0.39 | 0.445 | -0.114 | -- | 0.115 | 5.58 | 4.858 | 2245 | -- | -- |
| 18.56 | 0.201 | 12.2 | -0.29 | 0.357 | 0.498 | -- | -1.09 | 0.0586 | 5.61 | 9.343 | 1193 | -- | -- |
| 19.65 | 0.206 | 12.2 | -0.077 | 0.39 | 0.445 | -- | -- | 0.116 | 5.58 | 4.792 | 2239 | -- | -- |
| 25.05 | 0.233 | 12.2 | -0.296 | -- | 0.555 | -- | -1.06 | 0.0562 | -- | 9.843 | 1260 | -- | -- |
| 23.3 | 0.226 | 12.1 | 0.0855 | 0.383 | -- | -0.126 | -- | 0.204 | 5.09 | -- | -- | -- | -- |
| 23.34 | 0.226 | 12.1 | 0.0856 | 0.382 | -- | -- | -- | 0.205 | 5.09 | -- | -- | -- | -- |
| 26.26 | 0.239 | 12.2 | -0.0942 | -- | 0.478 | -- | -- | 0.115 | -- | 12.27 | 2712 | -- | -- |
| 19.65 | 0.206 | 12.2 | -- | 0.36 | 0.465 | -- | -- | 0.131 | 5.69 | 10.12 | 1143 | -- | -- |
| 30.99 | 0.26 | 12.2 | 0.0993 | -- | -- | -- | -- | 0.215 | -- | -- | -- | -- | -- |
| 23.53 | 0.227 | 12.2 | -- | 0.384 | -- | -- | -- | 0.195 | 5.08 | -- | -- | -- | -- |
| 26.09 | 0.238 | 12.2 | -- | -- | 0.514 | -- | -- | 0.128 | -- | 6.68 | 1263 | -- | -- |
| 31.25 | 0.261 | 12.2 | -- | -- | -- | -- | -- | 0.204 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.67 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 3 | 17.74 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 14 |
| 13 | 17.77 | humidity | 60 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 15 | 17.79 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 16 | 17.80 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 2 |
| 26 | 17.83 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 38 | 17.86 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 8 |
| 83 | 18.00 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 22 |
| 85 | 18.03 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 21 |
| 87 | 18.07 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 21 |
| 124 | 18.17 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 19 |
| 125 | 18.18 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 146 | 18.30 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 148 | 18.30 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 151 | 18.31 | temperature | 10 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 167 | 18.36 | temperature | 10 | 1440 | > th | dose dependent | rect. | 8 | 2 |
| 183 | 18.37 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 15 |
| 190 | 18.38 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 7 |
| 208 | 18.40 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 3 |
| 238 | 18.41 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 239 | 18.42 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 298 | 18.46 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 8 |
| 304 | 18.46 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 22 |
| 309 | 18.47 | temperature | 10 | 1440 | > th | dose dependent | sin | 4 | NA |
| 346 | 18.49 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 5 |
| 379 | 18.51 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 398 | 18.51 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 409 | 18.52 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 8 |
| 501 | 18.56 | temperature | 15 | 10 | > th | dose dependent | rect. | 4 | 20 |
| 505 | 18.57 | temperature | 30 | 1440 | < th | dose dependent | sin | 4 | NA |
| 510 | 18.57 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 532 | 18.58 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 562 | 18.59 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 567 | 18.59 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 6 |
| 594 | 18.60 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 597 | 18.60 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 637 | 18.61 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 657 | 18.61 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 18 |
| 748 | 18.63 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 22 |
| 749 | 18.63 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 23 |
| 802 | 18.64 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 22 |
| 852 | 18.66 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 858 | 18.66 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 859 | 18.66 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 10 |
| 911 | 18.67 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 973 | 18.68 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 23 |
| 978 | 18.68 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 23 |
| 986 | 18.69 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |