Os01g0598900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : PP-loop domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0598900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : PP-loop domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.61 | 0.307 | 8.87 | -0.964 | 0.148 | -0.49 | -0.0131 | -2.23 | -0.0521 | 23.8 | 28.7 | 1171 | -- | -- |
| 44.89 | 0.312 | 8.82 | -0.535 | 0.13 | -0.76 | -0.0497 | -- | 0.0182 | 22.7 | 28.29 | 2525 | -- | -- |
| 42.52 | 0.304 | 8.86 | -0.882 | 0.158 | -0.565 | -- | -1.79 | -0.0312 | 23.5 | 28.27 | 1142 | -- | -- |
| 44.88 | 0.312 | 8.82 | -0.528 | 0.133 | -0.765 | -- | -- | 0.00721 | 23.3 | 28.36 | 2510 | -- | -- |
| 43.94 | 0.309 | 8.86 | -0.987 | -- | -0.444 | -- | -2.34 | -0.0414 | -- | 28.7 | 1176 | -- | -- |
| 67.05 | 0.384 | 8.8 | -0.751 | 0.000188 | -- | -0.315 | -- | 0.0663 | 2.79 | -- | -- | -- | -- |
| 67.25 | 0.384 | 8.8 | -0.743 | 0.0507 | -- | -- | -- | 0.0687 | 20.4 | -- | -- | -- | -- |
| 44.37 | 0.31 | 8.81 | -0.514 | -- | -0.688 | -- | -- | -0.00432 | -- | 28.48 | 1211 | -- | -- |
| 51.85 | 0.335 | 8.81 | -- | 0.15 | -0.845 | -- | -- | 0.101 | 22.5 | 27.47 | 2501 | -- | -- |
| 67.39 | 0.384 | 8.8 | -0.743 | -- | -- | -- | -- | 0.0681 | -- | -- | -- | -- | -- |
| 81.79 | 0.423 | 8.78 | -- | 0.0559 | -- | -- | -- | 0.151 | 19.4 | -- | -- | -- | -- |
| 50.99 | 0.333 | 8.76 | -- | -- | -0.84 | -- | -- | 0.233 | -- | 25.28 | 6035 | -- | -- |
| 81.96 | 0.423 | 8.78 | -- | -- | -- | -- | -- | 0.151 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.74 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 2 | 42.90 | humidity | 70 | 14400 | < th | dose dependent | rect. | 17 | 5 |
| 13 | 42.96 | humidity | 60 | 14400 | < th | dose dependent | rect. | 16 | 17 |
| 29 | 43.04 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 32 | 43.19 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 59 | 43.93 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 5 |
| 61 | 44.00 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 69 | 44.11 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 70 | 44.11 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 2 |
| 95 | 44.31 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 9 |
| 116 | 44.36 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 15 |
| 153 | 44.48 | radiation | 10 | 1440 | < th | dose independent | rect. | 17 | 14 |
| 246 | 44.86 | humidity | 50 | 14400 | < th | dose independent | rect. | 16 | 19 |
| 285 | 44.98 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 13 |
| 290 | 45.00 | temperature | 25 | 1440 | > th | dose dependent | sin | 21 | NA |
| 349 | 45.15 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 14 |
| 357 | 45.17 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 22 |
| 358 | 45.17 | humidity | 50 | 14400 | < th | dose dependent | rect. | 16 | 19 |
| 359 | 45.18 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 6 |
| 372 | 45.22 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 22 |
| 376 | 45.23 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 5 |
| 397 | 45.24 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 402 | 45.24 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 21 |
| 410 | 45.26 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 2 |
| 415 | 45.27 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 417 | 45.27 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 18 |
| 464 | 45.33 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 14 |
| 477 | 45.34 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 498 | 45.36 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 10 |
| 550 | 45.40 | temperature | 30 | 1440 | > th | dose independent | sin | 17 | NA |
| 552 | 45.40 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 570 | 45.41 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 576 | 45.42 | temperature | 30 | 1440 | < th | dose independent | sin | 18 | NA |
| 587 | 45.43 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 7 |
| 606 | 45.44 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 10 |
| 627 | 45.44 | radiation | 1 | 1440 | > th | dose dependent | rect. | 17 | 14 |
| 637 | 45.46 | radiation | 20 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 643 | 45.46 | radiation | 1 | 1440 | > th | dose dependent | rect. | 18 | 12 |
| 661 | 45.47 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 12 |
| 708 | 45.49 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 723 | 45.49 | temperature | 30 | 1440 | < th | dose independent | rect. | 3 | 20 |
| 728 | 45.49 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 21 |
| 729 | 45.49 | temperature | 30 | 1440 | < th | dose independent | rect. | 1 | 22 |
| 882 | 45.53 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 923 | 45.56 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |