Os01g0598600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase A1, pepsin family protein.
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Os01g0598600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase A1, pepsin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 96.24 | 0.461 | 11.3 | -0.856 | 0.838 | 1.41 | -0.00244 | -1.31 | -0.0756 | 10.4 | 24.8 | 1258 | -- | -- |
| 96.39 | 0.457 | 11.2 | -0.573 | 0.732 | 1.27 | 0.0106 | -- | 0.0514 | 9.99 | 25.43 | 5628 | -- | -- |
| 96.22 | 0.457 | 11.3 | -0.853 | 0.843 | 1.41 | -- | -1.29 | -0.0793 | 10.4 | 24.67 | 1258 | -- | -- |
| 96.37 | 0.457 | 11.2 | -0.574 | 0.739 | 1.26 | -- | -- | 0.059 | 10 | 25.5 | 5625 | -- | -- |
| 126.18 | 0.523 | 11.3 | -0.932 | -- | 1.37 | -- | -1.41 | -0.0233 | -- | 26 | 5824 | -- | -- |
| 154.25 | 0.582 | 11.2 | -0.107 | 0.702 | -- | -0.123 | -- | 0.17 | 9.52 | -- | -- | -- | -- |
| 154.31 | 0.582 | 11.2 | -0.111 | 0.702 | -- | -- | -- | 0.17 | 9.52 | -- | -- | -- | -- |
| 126.9 | 0.525 | 11.2 | -0.565 | -- | 1.21 | -- | -- | 0.0517 | -- | 25.92 | 5817 | -- | -- |
| 104 | 0.475 | 11.2 | -- | 0.753 | 1.1 | -- | -- | 0.163 | 10.1 | 26.2 | 5610 | -- | -- |
| 183.36 | 0.633 | 11.2 | -0.116 | -- | -- | -- | -- | 0.172 | -- | -- | -- | -- | -- |
| 154.63 | 0.582 | 11.2 | -- | 0.702 | -- | -- | -- | 0.182 | 9.53 | -- | -- | -- | -- |
| 134.33 | 0.54 | 11.2 | -- | -- | 1.05 | -- | -- | 0.142 | -- | 26.4 | 5819 | -- | -- |
| 183.72 | 0.633 | 11.2 | -- | -- | -- | -- | -- | 0.184 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 95.64 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 6 |
| 3 | 95.77 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 7 | 95.96 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 10 | 96.05 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 18 | 96.20 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 17 |
| 20 | 96.21 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 39 | 96.43 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 10 |
| 50 | 96.58 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 8 |
| 64 | 96.67 | temperature | 25 | 1440 | > th | dose dependent | sin | 19 | NA |
| 137 | 97.46 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 20 |
| 212 | 97.81 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 227 | 97.86 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 234 | 97.87 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 240 | 97.90 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 21 |
| 273 | 98.04 | humidity | 80 | 43200 | > th | dose dependent | rect. | 17 | 9 |
| 290 | 98.19 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 308 | 98.26 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 311 | 98.29 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 21 |
| 313 | 98.29 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 314 | 98.29 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 316 | 98.30 | humidity | 80 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 339 | 98.49 | humidity | 80 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 341 | 98.51 | temperature | 25 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 354 | 98.62 | humidity | 90 | 43200 | < th | dose independent | sin | 12 | NA |
| 362 | 98.68 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 363 | 98.69 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 9 |
| 373 | 98.74 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 4 |
| 382 | 98.85 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 402 | 99.06 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 3 |
| 404 | 99.06 | humidity | 80 | 43200 | > th | dose dependent | sin | 15 | NA |
| 405 | 99.07 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 408 | 99.09 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 425 | 99.21 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 2 |
| 434 | 99.28 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 20 |
| 439 | 99.31 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 13 |
| 480 | 99.38 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 481 | 99.39 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 501 | 99.40 | humidity | 80 | 43200 | > th | dose dependent | rect. | 12 | 16 |
| 518 | 99.48 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 541 | 99.51 | temperature | 25 | 14400 | > th | dose independent | rect. | 18 | 6 |
| 565 | 99.55 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 3 |
| 571 | 99.57 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 3 |
| 572 | 99.57 | temperature | 25 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 583 | 99.59 | humidity | 80 | 43200 | > th | dose dependent | rect. | 11 | 18 |
| 592 | 99.62 | temperature | 30 | 14400 | < th | dose independent | sin | 17 | NA |
| 613 | 99.64 | temperature | 25 | 14400 | > th | dose dependent | rect. | 16 | 17 |
| 622 | 99.66 | temperature | 30 | 14400 | < th | dose independent | rect. | 3 | 14 |
| 652 | 99.70 | humidity | 90 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 653 | 99.70 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 689 | 99.76 | temperature | 30 | 14400 | > th | dose independent | sin | 17 | NA |
| 786 | 99.85 | temperature | 25 | 14400 | > th | dose dependent | sin | 13 | NA |
| 792 | 99.86 | temperature | 30 | 14400 | > th | dose independent | rect. | 18 | 23 |
| 881 | 99.94 | radiation | 1 | 1440 | < th | dose dependent | sin | 22 | NA |
| 902 | 99.96 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 6 |
| 905 | 99.96 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 907 | 99.97 | temperature | 30 | 14400 | < th | dose independent | no | NA | NA |
| 922 | 99.97 | temperature | 30 | 14400 | < th | dose independent | rect. | 6 | 18 |