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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0598200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Calcineurin B-like protein 8.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.63 (0.0375) R2 : 0.297
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.12 (0.091) R2dC : 0.245 R2C : 0.171
β3 : 0.937 (0.112) R2dE : 0.12 R2E : 0.0509
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0614 (0.0803) R2dN8 : 0.00145 R2N8 : 0.00571
σ : 0.699
deviance : 225.06
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_____
C
peak time of C : 0.49
E
wheather : temperature
threshold : 20.5
memory length : 165
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
215.65 0.69 3.6 0.532 1.15 0.882 1.44 1.05 0.155 0.423 20.5 26 -- --
219.36 0.69 3.62 0.315 1.15 0.878 1.08 -- 0.112 0.46 20.6 136 -- --
221.84 0.694 3.61 0.361 1.09 0.933 -- 0.626 0.134 0.587 20.48 189 -- --
223.39 0.696 3.62 0.282 1.11 0.876 -- -- 0.119 0.421 20.54 139 -- --
277.54 0.776 3.61 0.406 -- 0.972 -- 1.02 0.0972 -- 20.82 783 -- --
249.04 0.74 3.59 0.541 0.945 -- 0.943 -- 0.271 0.179 -- -- -- --
252.9 0.745 3.59 0.504 0.942 -- -- -- 0.267 0.167 -- -- -- --
270.96 0.767 3.65 0.278 -- 1.01 -- -- -0.063 -- 24.6 839 -- --
225.06 0.699 3.63 -- 1.12 0.937 -- -- 0.0614 0.49 20.5 165 -- --
308.69 0.821 3.57 0.534 -- -- -- -- 0.281 -- -- -- -- --
259.59 0.754 3.6 -- 0.948 -- -- -- 0.211 0.196 -- -- -- --
271.67 0.768 3.66 -- -- 0.979 -- -- -0.114 -- 24.65 839 -- --
316.22 0.83 3.58 -- -- -- -- -- 0.222 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 214.20 temperature 20 10 > th dose independent rect. 3 23
3 215.35 temperature 20 270 > th dose independent rect. 16 13
5 215.62 temperature 20 10 > th dose independent rect. 16 15
14 217.48 temperature 20 270 > th dose independent sin 14 NA
19 217.89 temperature 20 10 < th dose independent rect. 8 22
20 217.96 temperature 20 10 > th dose independent sin 11 NA
25 218.06 temperature 20 10 > th dose independent no NA NA
27 218.09 temperature 20 10 < th dose independent sin 11 NA
29 218.13 temperature 20 10 < th dose independent rect. 5 23
34 218.21 temperature 20 10 < th dose independent rect. 21 23
35 218.23 temperature 20 10 < th dose independent rect. 13 23
36 218.23 temperature 20 10 < th dose independent rect. 17 23
37 218.24 temperature 20 10 < th dose independent no NA NA
39 218.24 temperature 20 10 < th dose independent rect. 15 23
41 218.25 temperature 20 10 < th dose independent rect. 11 23
42 218.25 temperature 20 10 < th dose independent rect. 19 23
47 218.28 temperature 20 10 < th dose independent rect. 1 23
61 218.38 temperature 20 10 < th dose independent rect. 23 23
82 218.57 temperature 20 270 < th dose independent sin 14 NA
93 218.68 temperature 20 10 < th dose independent rect. 16 14
111 218.80 temperature 20 10 < th dose independent rect. 3 23
118 218.86 temperature 20 90 > th dose independent rect. 9 23
137 219.03 temperature 20 90 > th dose independent rect. 15 23
147 219.19 temperature 20 10 > th dose independent rect. 11 23
150 219.23 temperature 20 270 > th dose independent rect. 24 23
156 219.33 temperature 20 10 > th dose independent rect. 15 23
176 219.46 temperature 20 270 < th dose independent rect. 18 11
191 219.59 temperature 20 270 < th dose independent rect. 9 20
197 219.64 temperature 20 10 > th dose independent rect. 9 23
220 219.79 temperature 20 270 > th dose independent rect. 13 23
249 220.01 temperature 20 10 > th dose independent rect. 13 23
399 221.08 temperature 25 10 < th dose dependent rect. 5 23
471 221.43 temperature 25 10 < th dose dependent rect. 7 23
477 221.47 temperature 25 10 < th dose dependent rect. 14 22
487 221.53 temperature 25 10 < th dose dependent rect. 9 23
492 221.54 temperature 25 10 < th dose dependent rect. 19 23
493 221.55 temperature 25 10 < th dose dependent no NA NA
494 221.55 temperature 25 10 < th dose dependent rect. 11 23
500 221.59 temperature 25 10 < th dose dependent rect. 17 23
508 221.61 temperature 25 10 < th dose dependent rect. 23 23
516 221.65 temperature 25 10 < th dose dependent rect. 1 23
521 221.66 temperature 20 10 > th dose independent rect. 21 23
546 221.71 temperature 25 10 < th dose dependent rect. 21 23
670 222.23 temperature 25 30 < th dose dependent rect. 3 23
797 222.66 temperature 25 270 < th dose dependent rect. 11 20
825 222.80 temperature 25 720 < th dose dependent rect. 17 7
835 222.87 temperature 25 270 < th dose dependent sin 14 NA
852 222.93 temperature 20 10 > th dose independent rect. 1 23
886 223.06 temperature 20 10 > th dose independent rect. 20 11
923 223.17 radiation 10 14400 < th dose dependent rect. 23 1
968 223.39 temperature 25 10 < th dose dependent sin 12 NA