Os01g0596600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os01g0596600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 123.53 | 0.522 | 2.86 | 0.108 | 0.0965 | -5.73 | -0.16 | -13.5 | 0.0626 | 8.73 | 8.991 | 31 | -- | -- |
| 130.66 | 0.532 | 2.81 | 0.0297 | 0.0944 | -2.32 | -0.504 | -- | 0.0824 | 8.49 | 8.8 | 31 | -- | -- |
| 123.61 | 0.518 | 2.85 | 0.102 | 0.097 | -5.68 | -- | -13.3 | 0.0628 | 8.81 | 8.997 | 31 | -- | -- |
| 127.19 | 0.525 | 2.8 | 0.0306 | 0.112 | -2.33 | -- | -- | 0.121 | 8.28 | 9.301 | 31 | -- | -- |
| 124.15 | 0.519 | 2.86 | 0.102 | -- | -5.67 | -- | -13.3 | 0.0643 | -- | 8.996 | 31 | -- | -- |
| 142.35 | 0.559 | 2.82 | -0.104 | 0.113 | -- | -0.0411 | -- | 0.0234 | 11.5 | -- | -- | -- | -- |
| 142.36 | 0.559 | 2.82 | -0.105 | 0.114 | -- | -- | -- | 0.0232 | 11.4 | -- | -- | -- | -- |
| 127.44 | 0.526 | 2.81 | 0.00664 | -- | -2.3 | -- | -- | 0.0691 | -- | 9.4 | 31 | -- | -- |
| 126.95 | 0.525 | 2.81 | -- | 0.0932 | -2.3 | -- | -- | 0.0676 | 8.68 | 9.359 | 31 | -- | -- |
| 143.17 | 0.559 | 2.83 | -0.108 | -- | -- | -- | -- | 0.022 | -- | -- | -- | -- | -- |
| 142.65 | 0.559 | 2.82 | -- | 0.115 | -- | -- | -- | 0.0349 | 11.5 | -- | -- | -- | -- |
| 127.44 | 0.526 | 2.81 | -- | -- | -2.3 | -- | -- | 0.0683 | -- | 9.345 | 31 | -- | -- |
| 143.48 | 0.559 | 2.82 | -- | -- | -- | -- | -- | 0.034 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 115.89 | wind | 9 | 90 | > th | dose dependent | rect. | 11 | 3 |
| 31 | 118.84 | wind | 9 | 90 | > th | dose independent | rect. | 11 | 3 |
| 40 | 119.51 | wind | 9 | 270 | > th | dose dependent | rect. | 11 | 1 |
| 43 | 119.63 | wind | 5 | 10 | > th | dose independent | rect. | 12 | 2 |
| 46 | 120.34 | radiation | 20 | 10 | < th | dose independent | rect. | 14 | 1 |
| 93 | 120.64 | wind | 9 | 30 | < th | dose independent | sin | 2 | NA |
| 110 | 120.87 | wind | 5 | 90 | > th | dose independent | rect. | 12 | 2 |
| 115 | 121.48 | radiation | 20 | 90 | < th | dose independent | rect. | 12 | 1 |
| 116 | 121.56 | wind | 5 | 90 | > th | dose dependent | rect. | 12 | 2 |
| 128 | 122.69 | radiation | 10 | 10 | < th | dose independent | rect. | 12 | 2 |
| 134 | 122.76 | radiation | 20 | 90 | < th | dose dependent | rect. | 12 | 1 |
| 135 | 122.78 | wind | 9 | 30 | > th | dose dependent | sin | 5 | NA |
| 143 | 122.94 | wind | 9 | 270 | > th | dose independent | rect. | 11 | 1 |
| 167 | 124.42 | wind | 9 | 30 | > th | dose independent | sin | 3 | NA |
| 185 | 124.88 | radiation | 20 | 10 | < th | dose dependent | rect. | 14 | 1 |
| 200 | 125.31 | wind | 9 | 30 | < th | dose independent | no | NA | NA |
| 246 | 125.80 | radiation | 20 | 10 | < th | dose dependent | rect. | 12 | 3 |
| 460 | 127.48 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 13 | 1 |
| 657 | 128.69 | wind | 9 | 270 | > th | dose dependent | sin | 7 | NA |
| 669 | 128.75 | humidity | 80 | 90 | > th | dose independent | rect. | 12 | 1 |
| 692 | 128.80 | humidity | 80 | 90 | > th | dose dependent | rect. | 12 | 1 |
| 779 | 129.19 | wind | 9 | 270 | < th | dose independent | sin | 6 | NA |
| 936 | 129.72 | wind | 9 | 30 | > th | dose independent | no | NA | NA |
| 977 | 129.72 | wind | 9 | 30 | > th | dose independent | rect. | 13 | 23 |