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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0595700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Ribosomal RNA apurinic site specific lyase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.86 (0.0228) R2 : 0.0036
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0615 (0.0479) R2dN8 : 0.00465 R2N8 : 0.0036
σ : 0.429
deviance : 84.3
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
75.31 0.408 2.89 -0.143 0.0582 0.898 -0.482 -2.89 0.0961 4.66 0.4263 3100 -- --
80.48 0.418 2.85 -0.203 0.051 0.572 -0.525 -- 0.101 4.59 0.4726 3290 -- --
75.75 0.405 2.89 -0.149 0.057 0.897 -- -2.97 0.098 4.49 0.4361 2996 -- --
81.05 0.419 2.85 -0.185 0.0534 0.539 -- -- 0.0892 7.62 0.3942 3290 -- --
75.92 0.406 2.89 -0.152 -- 0.892 -- -2.93 0.0988 -- 0.4335 2997 -- --
83.46 0.428 2.86 -0.087 0.0546 -- -0.446 -- 0.0487 5.96 -- -- -- --
83.91 0.429 2.86 -0.0899 0.0586 -- -- -- 0.0507 7.75 -- -- -- --
81.2 0.42 2.85 -0.186 -- 0.541 -- -- 0.0885 -- 0.3878 3290 -- --
81.87 0.421 2.85 -- 0.0525 0.46 -- -- 0.1 7.66 0.4087 3370 -- --
84.09 0.428 2.86 -0.0892 -- -- -- -- 0.0516 -- -- -- -- --
84.12 0.429 2.85 -- 0.0579 -- -- -- 0.0608 7.86 -- -- -- --
82.03 0.422 2.85 -- -- 0.463 -- -- 0.102 -- 0.4025 3370 -- --
84.3 0.429 2.86 -- -- -- -- -- 0.0615 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 71.99 radiation 1.0 90 > th dose independent rect. 4 1
11 71.99 radiation 1.0 90 > th dose dependent rect. 4 1
21 73.23 temperature 20.0 30 > th dose dependent rect. 2 1
22 73.26 atmosphere 1005.0 30 > th dose dependent rect. 2 1
24 73.30 temperature 20.0 30 > th dose independent rect. 2 1
25 73.30 atmosphere 1005.0 30 > th dose independent rect. 2 1
26 73.30 wind 3.0 30 < th dose dependent rect. 2 1
32 73.36 wind 3.0 30 < th dose independent rect. 2 1
34 73.38 humidity 80.0 30 > th dose independent rect. 2 1
35 73.42 wind 9.0 30 < th dose independent rect. 2 1
36 73.42 temperature 10.0 30 > th dose independent rect. 2 1
38 73.42 temperature 30.0 30 < th dose independent rect. 2 1
39 73.42 humidity 50.0 30 > th dose independent rect. 2 1
42 73.42 atmosphere 995.0 30 > th dose independent rect. 2 1
44 73.42 atmosphere 1010.0 30 < th dose independent rect. 2 1
46 73.42 radiation 1.0 30 < th dose independent rect. 2 1
51 73.42 precipitation 0.1 30 < th dose independent rect. 2 1
52 73.42 temperature 10.0 30 > th dose independent rect. 3 23
53 73.42 radiation 1.0 30 < th dose dependent rect. 2 1
58 73.42 precipitation 0.1 30 < th dose dependent rect. 2 1
61 73.43 humidity 50.0 30 > th dose dependent rect. 2 1
69 73.67 atmosphere 1015.0 30 < th dose dependent rect. 2 1
71 73.91 temperature 30.0 30 < th dose dependent rect. 2 1
78 74.23 wind 1.0 30 > th dose independent rect. 2 1
81 74.36 temperature 20.0 270 < th dose independent rect. 9 1
82 74.37 wind 1.0 10 < th dose dependent rect. 6 1
124 75.18 wind 9.0 1440 < th dose independent rect. 3 1
125 75.18 temperature 10.0 1440 > th dose independent rect. 3 1
128 75.18 temperature 30.0 1440 < th dose independent rect. 3 1
132 75.18 humidity 50.0 1440 > th dose independent rect. 3 1
141 75.18 atmosphere 995.0 1440 > th dose independent rect. 3 1
142 75.18 radiation 1.0 1440 < th dose independent rect. 3 1
162 75.18 temperature 10.0 1440 > th dose independent rect. 4 23
165 75.18 radiation 1.0 1440 < th dose dependent rect. 3 1
183 75.74 radiation 10.0 90 < th dose independent rect. 10 1
186 75.97 wind 9.0 30 < th dose independent rect. 3 23
188 76.04 radiation 10.0 90 < th dose dependent rect. 10 1
189 76.05 precipitation 0.1 30 < th dose independent rect. 3 23
190 76.05 precipitation 0.1 30 < th dose dependent rect. 3 23
194 76.31 radiation 1.0 10 < th dose dependent rect. 6 1
200 76.59 atmosphere 995.0 30 > th dose independent rect. 3 23
217 77.21 precipitation 0.1 4320 < th dose independent rect. 11 1
218 77.21 precipitation 0.1 4320 < th dose dependent rect. 11 1
219 77.31 precipitation 0.1 4320 > th dose independent rect. 11 1
220 77.31 precipitation 0.1 4320 > th dose dependent rect. 11 1
221 77.33 precipitation 0.1 4320 > th dose dependent rect. 21 1
222 77.35 precipitation 0.1 4320 > th dose independent rect. 21 1
224 77.39 wind 1.0 4320 < th dose dependent rect. 19 1
229 77.44 precipitation 0.1 4320 > th dose independent rect. 8 1
230 77.44 precipitation 0.1 4320 > th dose dependent rect. 8 1
232 77.47 precipitation 0.1 4320 < th dose independent rect. 8 1
233 77.47 precipitation 0.1 4320 < th dose independent rect. 21 1
234 77.47 precipitation 0.1 4320 < th dose dependent rect. 8 1
235 77.47 precipitation 0.1 4320 < th dose dependent rect. 21 1
274 77.70 wind 1.0 4320 < th dose independent rect. 19 1
282 77.72 precipitation 0.1 4320 < th dose independent rect. 8 4
284 77.72 precipitation 0.1 4320 < th dose dependent rect. 8 4
292 77.76 precipitation 0.1 4320 > th dose independent rect. 8 5
294 77.76 precipitation 0.1 4320 > th dose dependent rect. 8 5
297 77.77 atmosphere 995.0 14400 > th dose independent rect. 5 5
300 77.79 temperature 20.0 1440 > th dose independent rect. 9 1
309 77.81 precipitation 0.1 4320 > th dose independent rect. 16 1
320 77.85 precipitation 0.1 4320 > th dose dependent rect. 16 1
327 77.87 precipitation 0.1 4320 > th dose dependent rect. 18 5
331 77.88 precipitation 0.1 4320 > th dose independent rect. 18 5
335 77.90 precipitation 0.1 4320 < th dose independent rect. 16 1
338 77.90 precipitation 0.1 4320 < th dose dependent rect. 16 1
341 77.91 precipitation 0.1 4320 < th dose independent rect. 18 5
343 77.91 precipitation 0.1 4320 < th dose dependent rect. 18 5
364 78.00 precipitation 0.1 4320 > th dose independent rect. 16 7
368 78.01 atmosphere 995.0 14400 > th dose independent rect. 19 8
373 78.02 atmosphere 995.0 14400 > th dose independent rect. 19 5
376 78.02 atmosphere 995.0 14400 > th dose independent rect. 19 15
377 78.03 wind 1.0 4320 > th dose independent rect. 19 1
378 78.03 atmosphere 995.0 14400 > th dose independent rect. 1 1
379 78.03 atmosphere 995.0 14400 > th dose independent rect. 22 5
382 78.03 atmosphere 995.0 14400 > th dose independent rect. 22 12
388 78.04 precipitation 0.1 4320 < th dose independent rect. 16 7
391 78.04 precipitation 0.1 4320 < th dose dependent rect. 16 7
392 78.05 atmosphere 995.0 14400 > th dose independent rect. 22 2
394 78.05 wind 1.0 10 < th dose independent rect. 2 5
399 78.05 atmosphere 995.0 14400 > th dose independent rect. 1 9
426 78.07 atmosphere 995.0 14400 > th dose independent rect. 19 17
462 78.11 atmosphere 995.0 14400 < th dose independent rect. 1 1
467 78.11 atmosphere 995.0 14400 < th dose independent rect. 21 1
621 78.11 atmosphere 995.0 14400 < th dose dependent rect. 1 1
626 78.11 atmosphere 995.0 14400 < th dose dependent rect. 21 1
773 78.12 precipitation 0.1 4320 > th dose independent rect. 18 1
805 78.15 atmosphere 995.0 14400 < th dose dependent sin 8 NA
810 78.16 precipitation 0.1 4320 < th dose independent rect. 18 1
817 78.16 precipitation 0.1 4320 < th dose dependent rect. 18 1
849 78.20 wind 1.0 10 > th dose independent rect. 21 23
866 78.25 precipitation 0.1 4320 > th dose independent rect. 8 15
867 78.25 precipitation 0.1 4320 < th dose independent rect. 8 15
871 78.25 precipitation 0.1 4320 < th dose dependent rect. 8 15
894 78.30 precipitation 0.1 4320 > th dose dependent rect. 18 1
896 78.30 precipitation 0.1 4320 > th dose dependent rect. 16 7
904 78.32 precipitation 0.1 4320 > th dose independent rect. 16 3
906 78.32 precipitation 0.1 4320 > th dose independent rect. 11 12
931 78.35 precipitation 0.1 4320 < th dose independent rect. 11 12
934 78.35 precipitation 0.1 4320 < th dose dependent rect. 11 12
937 78.35 precipitation 0.1 4320 > th dose dependent rect. 8 15
948 78.37 precipitation 0.1 4320 < th dose independent rect. 16 3
950 78.37 precipitation 0.1 4320 < th dose dependent rect. 16 3
994 78.43 humidity 90.0 720 < th dose independent rect. 1 4