Os01g0594500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0594500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 182.71 | 0.635 | 3 | -0.284 | 0.203 | -0.444 | 0.917 | 1.52 | -0.165 | 8.09 | 39.9 | 10 | -- | -- |
| 188.06 | 0.639 | 3 | -0.31 | 0.202 | -0.477 | 0.532 | -- | -0.187 | 7.34 | 39.91 | 11 | -- | -- |
| 184.52 | 0.638 | 3 | -0.291 | 0.219 | -0.382 | -- | 1.46 | -0.174 | 8.5 | 39.9 | 10 | -- | -- |
| 188.88 | 0.64 | 3 | -0.321 | 0.197 | -0.479 | -- | -- | -0.186 | 8.07 | 39.92 | 11 | -- | -- |
| 187.08 | 0.641 | 3.01 | -0.29 | -- | -0.441 | -- | 1.45 | -0.171 | -- | 39.9 | 10 | -- | -- |
| 195.42 | 0.655 | 3 | -0.342 | 0.301 | -- | 0.202 | -- | -0.189 | 9.58 | -- | -- | -- | -- |
| 195.54 | 0.655 | 3 | -0.334 | 0.299 | -- | -- | -- | -0.188 | 9.89 | -- | -- | -- | -- |
| 190.95 | 0.644 | 3 | -0.283 | -- | -0.533 | -- | -- | -0.138 | -- | 40 | 11 | -- | -- |
| 191.57 | 0.645 | 3 | -- | 0.181 | -0.469 | -- | -- | -0.151 | 8.18 | 39.91 | 11 | -- | -- |
| 200.9 | 0.662 | 3.01 | -0.337 | -- | -- | -- | -- | -0.188 | -- | -- | -- | -- | -- |
| 198.48 | 0.659 | 2.99 | -- | 0.3 | -- | -- | -- | -0.151 | 9.97 | -- | -- | -- | -- |
| 193.42 | 0.648 | 3 | -- | -- | -0.548 | -- | -- | -0.136 | -- | 39.9 | 11 | -- | -- |
| 203.9 | 0.666 | 3 | -- | -- | -- | -- | -- | -0.151 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 178.18 | radiation | 40 | 10 | < th | dose independent | rect. | 3 | 23 |
| 3 | 179.67 | radiation | 40 | 30 | > th | dose independent | rect. | 13 | 23 |
| 5 | 180.31 | radiation | 30 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 6 | 180.34 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 8 | 181.08 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 5 |
| 16 | 181.89 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 1 |
| 17 | 181.91 | radiation | 40 | 10 | < th | dose independent | rect. | 13 | 23 |
| 24 | 182.35 | humidity | 70 | 90 | < th | dose dependent | rect. | 8 | 6 |
| 25 | 182.37 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 1 |
| 27 | 182.41 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 3 |
| 28 | 182.41 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 5 |
| 29 | 182.43 | temperature | 25 | 270 | < th | dose independent | rect. | 8 | 5 |
| 31 | 182.44 | temperature | 20 | 720 | < th | dose dependent | rect. | 4 | 1 |
| 34 | 182.51 | humidity | 70 | 10 | < th | dose dependent | rect. | 9 | 5 |
| 36 | 182.52 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 12 |
| 38 | 182.55 | radiation | 40 | 10 | < th | dose independent | rect. | 5 | 23 |
| 62 | 182.78 | radiation | 40 | 10 | < th | dose independent | no | NA | NA |
| 63 | 182.82 | humidity | 50 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 69 | 182.89 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 14 |
| 72 | 182.91 | temperature | 25 | 720 | < th | dose dependent | rect. | 2 | 9 |
| 73 | 182.92 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 1 |
| 74 | 182.94 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 11 |
| 75 | 182.95 | temperature | 25 | 720 | < th | dose dependent | rect. | 2 | 11 |
| 81 | 183.00 | radiation | 1 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 85 | 183.02 | temperature | 15 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 119 | 183.18 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 9 |
| 124 | 183.20 | temperature | 25 | 270 | < th | dose independent | rect. | 8 | 12 |
| 146 | 183.22 | wind | 9 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 150 | 183.22 | temperature | 30 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 154 | 183.22 | humidity | 50 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 163 | 183.22 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 164 | 183.22 | radiation | 1 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 184 | 183.22 | temperature | 10 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 200 | 183.25 | temperature | 30 | 90 | < th | dose dependent | rect. | 10 | 10 |
| 225 | 183.33 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 2 | 12 |
| 238 | 183.37 | radiation | 40 | 10 | < th | dose independent | rect. | 5 | 14 |
| 246 | 183.39 | temperature | 25 | 720 | < th | dose dependent | sin | 4 | NA |
| 249 | 183.40 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 1 |
| 250 | 183.40 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 3 |
| 261 | 183.45 | radiation | 40 | 10 | < th | dose independent | sin | 17 | NA |
| 270 | 183.48 | radiation | 40 | 10 | < th | dose independent | sin | 4 | NA |
| 271 | 183.48 | radiation | 40 | 10 | < th | dose independent | rect. | 20 | 23 |
| 277 | 183.53 | radiation | 40 | 10 | > th | dose independent | rect. | 9 | 3 |
| 302 | 183.55 | radiation | 40 | 90 | < th | dose independent | rect. | 12 | 23 |
| 308 | 183.56 | wind | 7 | 10 | > th | dose dependent | rect. | 12 | 2 |
| 319 | 183.59 | radiation | 40 | 10 | > th | dose dependent | rect. | 9 | 3 |
| 360 | 183.68 | radiation | 10 | 10 | > th | dose dependent | rect. | 9 | 5 |
| 379 | 183.72 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 23 | 13 |
| 381 | 183.74 | radiation | 1 | 10 | > th | dose dependent | rect. | 11 | 1 |
| 393 | 183.79 | radiation | 1 | 10 | > th | dose dependent | rect. | 11 | 3 |
| 401 | 183.82 | humidity | 70 | 90 | < th | dose dependent | rect. | 11 | 3 |
| 438 | 183.92 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 3 |
| 518 | 184.08 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 19 |
| 521 | 184.09 | radiation | 40 | 10 | > th | dose dependent | sin | 8 | NA |
| 523 | 184.10 | radiation | 40 | 10 | < th | dose independent | rect. | 13 | 13 |
| 592 | 184.17 | radiation | 40 | 90 | < th | dose independent | rect. | 20 | 23 |
| 599 | 184.17 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 11 | 18 |
| 652 | 184.22 | radiation | 30 | 10 | > th | dose dependent | sin | 3 | NA |
| 656 | 184.23 | radiation | 30 | 10 | > th | dose dependent | no | NA | NA |
| 657 | 184.23 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 6 |
| 770 | 184.23 | radiation | 30 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 819 | 184.37 | humidity | 60 | 90 | < th | dose independent | rect. | 8 | 6 |
| 834 | 184.37 | humidity | 70 | 90 | < th | dose dependent | sin | 6 | NA |
| 871 | 184.42 | temperature | 25 | 90 | < th | dose independent | rect. | 10 | 10 |
| 890 | 184.43 | humidity | 60 | 720 | > th | dose independent | rect. | 20 | 15 |
| 908 | 184.44 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 19 |
| 911 | 184.45 | humidity | 70 | 10 | < th | dose dependent | rect. | 11 | 3 |
| 916 | 184.46 | atmosphere | 995 | 720 | > th | dose dependent | rect. | 2 | 1 |