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Os01g0593500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ribosomal protein L25 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.82 (0.03) R2 : 0.732
β1 : 1.29 (0.11) R2dD : 0.0875 R2D : 0.108
β2 : 2.56 (0.0804) R2dC : 0.705 R2C : 0.389
β3 : -2.05 (0.115) R2dE : 0.221 R2E : -0.0634
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.151 (0.0642) R2dN8 : 0.00485 R2N8 : 0.00796
σ : 0.56
deviance : 144.57
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C
peak time of C : 14.9
E
wheather : temperature
threshold : 36.74
memory length : 124
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3.25
open length of G : 15.8

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
144.29 0.564 8.82 1.37 2.33 -1.98 0.199 -1.06 -0.161 15.1 34.03 82 3.37 16
145.76 0.562 8.82 1.33 2.44 -1.98 -0.165 -- -0.178 15 35.67 84 3.4 15.9
143.88 0.559 8.81 1.36 2.45 -2.02 -- -0.854 -0.139 15 35.76 95 3.33 15.8
144.57 0.56 8.82 1.29 2.56 -2.05 -- -- -0.151 14.9 36.74 124 3.25 15.8
348.26 0.869 8.85 1.4 -- -2.55 -- -2.17 -0.168 -- 29.69 116 0.85 17.4
196.2 0.657 8.82 1.54 2.29 -- 0.761 -- -0.0371 16.5 -- -- -- --
197.76 0.659 8.82 1.54 2.29 -- -- -- -0.033 16.5 -- -- -- --
350.49 0.876 8.85 1.13 -- -2.31 -- -- -0.316 -- 29.9 137 0.0167 17.6
186.68 0.636 8.86 -- 2.4 -2.4 -- -- -0.362 14.8 33.3 122 3.37 15.7
478.11 1.02 8.8 1.45 -- -- -- -- -0.0934 -- -- -- -- --
260.33 0.755 8.85 -- 2.26 -- -- -- -0.205 16.5 -- -- -- --
273.52 0.77 8.82 -- -- -2.7 -- -- -0.162 -- 32.4 177 0.0166 8.02
533.69 1.08 8.84 -- -- -- -- -- -0.254 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 149.54 temperature 30.0 90 < th dose dependent rect. 3 16
2 149.73 temperature 10.0 90 > th dose dependent rect. 8 19
3 151.25 temperature 10.0 270 > th dose dependent rect. 6 8
4 151.38 temperature 30.0 90 < th dose dependent rect. 3 18
7 152.31 temperature 15.0 90 > th dose dependent rect. 8 7
21 153.93 temperature 30.0 10 < th dose dependent rect. 4 16
27 154.56 temperature 30.0 270 < th dose dependent rect. 1 18
29 154.57 temperature 10.0 90 > th dose dependent rect. 8 9
41 155.12 temperature 15.0 10 > th dose dependent rect. 8 8
93 157.07 temperature 10.0 270 > th dose dependent rect. 21 15
106 157.61 temperature 30.0 90 < th dose dependent rect. 3 8
145 158.74 radiation 40.0 270 < th dose dependent rect. 2 15
163 159.16 temperature 15.0 270 > th dose dependent rect. 8 3
166 159.19 temperature 10.0 90 > th dose dependent sin 3 NA
182 159.46 temperature 30.0 270 < th dose dependent rect. 3 2
184 159.50 temperature 30.0 270 < th dose dependent rect. 1 8
210 160.09 temperature 30.0 90 < th dose dependent sin 2 NA
213 160.12 temperature 30.0 90 < th dose dependent rect. 3 6
238 160.43 temperature 30.0 90 < th dose independent rect. 3 16
257 160.71 atmosphere 1000.0 90 > th dose dependent rect. 3 5
281 160.96 radiation 20.0 270 < th dose dependent rect. 2 12
286 161.01 wind 5.0 270 < th dose independent rect. 3 3
291 161.06 wind 9.0 270 < th dose dependent rect. 7 7
303 161.16 radiation 20.0 270 < th dose dependent rect. 2 8
343 161.59 radiation 10.0 270 > th dose independent sin 5 NA
350 161.67 wind 5.0 270 < th dose independent rect. 2 5
385 162.06 radiation 10.0 270 > th dose independent rect. 17 21
402 162.19 radiation 40.0 270 < th dose independent rect. 2 15
413 162.29 wind 7.0 270 < th dose independent rect. 6 21
436 162.46 wind 7.0 270 < th dose independent rect. 7 19
448 162.57 radiation 20.0 270 < th dose dependent sin 5 NA
465 162.69 radiation 10.0 270 > th dose independent rect. 6 8
479 162.70 humidity 90.0 90 < th dose independent rect. 8 7
486 162.74 humidity 70.0 90 > th dose independent rect. 3 16
494 162.79 wind 1.0 270 > th dose independent rect. 2 5
518 162.87 wind 1.0 270 > th dose independent rect. 1 7
526 162.94 precipitation 0.1 90 < th dose independent rect. 8 19
528 162.94 precipitation 0.1 90 < th dose dependent rect. 8 19
534 163.01 radiation 20.0 270 < th dose independent rect. 1 8
556 163.17 radiation 40.0 90 < th dose independent rect. 4 15
586 163.38 radiation 10.0 270 < th dose independent rect. 2 16
594 163.42 temperature 25.0 90 > th dose dependent rect. 19 19
598 163.45 radiation 10.0 270 < th dose independent rect. 2 6
601 163.47 radiation 40.0 270 < th dose independent rect. 11 20
605 163.51 radiation 10.0 90 > th dose independent rect. 8 7
612 163.56 precipitation 0.1 90 < th dose independent rect. 3 5
613 163.56 precipitation 0.1 90 < th dose dependent rect. 3 5
614 163.57 precipitation 0.1 270 < th dose independent rect. 3 3
616 163.57 precipitation 0.1 270 < th dose dependent rect. 3 3
617 163.58 temperature 15.0 90 > th dose independent rect. 8 7
638 163.73 wind 7.0 270 < th dose independent rect. 6 8
656 163.81 temperature 25.0 270 > th dose dependent sin 8 NA
657 163.82 atmosphere 1005.0 270 > th dose independent rect. 3 3
665 163.85 temperature 25.0 270 > th dose dependent rect. 19 17
667 163.86 wind 7.0 90 < th dose independent rect. 8 9
684 164.01 wind 1.0 270 > th dose independent rect. 3 3
711 164.14 precipitation 0.1 270 < th dose independent rect. 6 21
712 164.14 radiation 40.0 90 < th dose dependent rect. 13 19
713 164.14 precipitation 0.1 270 < th dose dependent rect. 6 21
724 164.21 humidity 80.0 10 < th dose independent rect. 8 7
730 164.23 radiation 10.0 270 < th dose dependent rect. 3 4
734 164.25 atmosphere 1005.0 90 > th dose independent rect. 3 5
736 164.25 radiation 40.0 90 < th dose dependent rect. 15 17
754 164.37 temperature 10.0 90 > th dose independent rect. 3 5
756 164.37 temperature 30.0 90 < th dose independent rect. 3 5
757 164.37 humidity 50.0 90 > th dose independent rect. 3 5
759 164.37 atmosphere 995.0 90 > th dose independent rect. 3 5
760 164.37 atmosphere 1015.0 90 < th dose independent rect. 3 5
761 164.37 temperature 10.0 90 > th dose independent rect. 8 19
793 164.52 humidity 90.0 10 < th dose dependent rect. 8 7
827 164.60 temperature 30.0 10 < th dose dependent rect. 4 10
836 164.65 temperature 10.0 270 > th dose independent rect. 3 3
838 164.65 temperature 30.0 270 < th dose independent rect. 3 3
839 164.65 humidity 50.0 270 > th dose independent rect. 3 3
842 164.65 atmosphere 995.0 270 > th dose independent rect. 3 3
843 164.65 atmosphere 1015.0 270 < th dose independent rect. 3 3
844 164.65 radiation 20.0 270 < th dose independent rect. 3 3
847 164.65 humidity 50.0 90 > th dose independent rect. 15 17
849 164.65 temperature 10.0 270 > th dose independent rect. 6 21
853 164.68 radiation 40.0 90 < th dose independent rect. 3 5
888 164.81 humidity 90.0 90 < th dose dependent rect. 8 7
895 164.85 radiation 40.0 270 < th dose dependent rect. 3 3
900 164.86 wind 9.0 270 < th dose dependent rect. 7 19
907 164.90 atmosphere 995.0 90 > th dose independent rect. 15 17
921 164.97 temperature 30.0 10 < th dose dependent rect. 4 5
930 164.99 temperature 15.0 90 > th dose independent rect. 8 9
947 165.00 radiation 1.0 270 > th dose dependent rect. 8 2
950 165.01 precipitation 0.1 90 < th dose independent rect. 8 7
951 165.01 precipitation 0.1 90 < th dose dependent rect. 8 7
964 165.07 temperature 30.0 10 < th dose dependent rect. 4 8
975 165.14 temperature 15.0 270 > th dose independent rect. 6 8
983 165.17 radiation 30.0 90 < th dose independent rect. 3 8
995 165.20 temperature 15.0 10 > th dose dependent rect. 23 15
998 165.22 wind 9.0 270 < th dose dependent rect. 3 3