Os01g0593100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0593100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 98.37 | 0.466 | 5.59 | 2.63 | 0.521 | -1.14 | -0.545 | 2.82 | 0.627 | 17.4 | 21.36 | 1533 | -- | -- |
| 107.13 | 0.482 | 5.66 | 2.06 | 0.481 | -1.09 | -0.789 | -- | 0.515 | 17.4 | 17.35 | 7293 | -- | -- |
| 99.08 | 0.464 | 5.59 | 2.65 | 0.519 | -1.14 | -- | 2.86 | 0.626 | 17.2 | 21.38 | 1532 | -- | -- |
| 107.58 | 0.483 | 5.66 | 2.04 | 0.488 | -1.12 | -- | -- | 0.503 | 17.2 | 17.12 | 7262 | -- | -- |
| 109.94 | 0.488 | 5.58 | 2.59 | -- | -1.22 | -- | 2.79 | 0.607 | -- | 21.1 | 1315 | -- | -- |
| 136 | 0.547 | 5.74 | 1.41 | 0.527 | -- | -0.47 | -- | 0.155 | 17.2 | -- | -- | -- | -- |
| 136.54 | 0.547 | 5.74 | 1.41 | 0.523 | -- | -- | -- | 0.153 | 17 | -- | -- | -- | -- |
| 119.58 | 0.509 | 5.66 | 2.02 | -- | -1.13 | -- | -- | 0.491 | -- | 17.3 | 7077 | -- | -- |
| 178.86 | 0.623 | 5.76 | -- | 0.744 | -0.898 | -- | -- | 0.0999 | 17.5 | -7.421 | 412 | -- | -- |
| 150.92 | 0.574 | 5.74 | 1.39 | -- | -- | -- | -- | 0.139 | -- | -- | -- | -- | -- |
| 189.01 | 0.643 | 5.78 | -- | 0.498 | -- | -- | -- | -0.00435 | 17.1 | -- | -- | -- | -- |
| 191.38 | 0.644 | 5.75 | -- | -- | -0.464 | -- | -- | -0.0432 | -- | 29.2 | 5812 | -- | -- |
| 202.03 | 0.663 | 5.77 | -- | -- | -- | -- | -- | -0.015 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 91.94 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 2 | 92.43 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 8 | 93.65 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 24 | 95.06 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 30 | 95.28 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 34 | 95.40 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 51 | 95.83 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 21 |
| 89 | 97.04 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 94 | 97.22 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 121 | 97.58 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 18 |
| 158 | 97.94 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 172 | 98.06 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 175 | 98.07 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 194 | 98.25 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 15 |
| 248 | 98.64 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 17 |
| 302 | 98.94 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 5 |
| 323 | 99.03 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 327 | 99.05 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 7 |
| 338 | 99.10 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 5 |
| 388 | 99.28 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 390 | 99.30 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 395 | 99.31 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 400 | 99.32 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 412 | 99.36 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 415 | 99.37 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 423 | 99.40 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 23 |
| 431 | 99.43 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 524 | 99.67 | temperature | 25 | 1440 | > th | dose independent | rect. | 14 | 8 |
| 559 | 99.77 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 8 |
| 626 | 99.97 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 13 |
| 641 | 100.02 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 656 | 100.07 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 13 |
| 727 | 100.27 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 774 | 100.41 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 790 | 100.45 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 800 | 100.47 | temperature | 25 | 1440 | < th | dose independent | sin | 18 | NA |
| 807 | 100.47 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 869 | 100.67 | temperature | 25 | 1440 | > th | dose independent | sin | 18 | NA |
| 937 | 100.85 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 6 |
| 953 | 100.88 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 4 |
| 983 | 100.98 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |