FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0592500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1070 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.59 (0.0557) R2 : 0.458
β1 : -1.07 (0.202) R2dD : 0.0346 R2D : 0.0507
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.76 (0.193) R2dE : 0.265 R2E : 0.336
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.788 (0.123) R2dN8 : 0.0712 R2N8 : 0.143
σ : 1.03
deviance : 491.28
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 90.26
memory length : 15
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 1.96
open length of G : 5.9

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
502.29 1.05 3.59 -1.05 0.0999 2.68 -0.619 -0.197 0.766 9.77 90 15 1.97 5.5
502.32 1.04 3.59 -1.05 0.0991 2.69 -0.639 -- 0.766 9.57 90.07 15 1.96 5.55
503.74 1.05 3.59 -1.08 0.102 2.7 -- -0.254 0.76 9.82 90 15 1.97 5.57
491.37 1.03 3.59 -1.1 0.0174 2.79 -- -- 0.77 9.68 90.27 15 1.95 5.9
491.24 1.03 3.59 -1.08 -- 2.75 -- -0.173 0.782 -- 90.14 15 1.97 5.88
664.7 1.21 3.46 -1.14 0.845 -- -1.92 -- 1.27 6.4 -- -- -- --
673.79 1.22 3.46 -1.17 0.838 -- -- -- 1.27 6.3 -- -- -- --
491.28 1.03 3.59 -1.07 -- 2.76 -- -- 0.788 -- 90.26 15 1.96 5.9
521.61 1.06 3.56 -- 0.0155 2.79 -- -- 0.9 9.79 90.58 16 1.93 5.89
710.2 1.25 3.47 -1.15 -- -- -- -- 1.29 -- -- -- -- --
709.77 1.25 3.43 -- 0.822 -- -- -- 1.4 6.38 -- -- -- --
521.62 1.06 3.56 -- -- 2.79 -- -- 0.9 -- 90.56 16 1.94 5.89
744.84 1.27 3.44 -- -- -- -- -- 1.42 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 512.03 humidity 90 10 < th dose independent rect. 2 5
9 529.67 atmosphere 1005 270 > th dose dependent rect. 3 2
14 533.84 atmosphere 1005 90 > th dose dependent rect. 3 4
16 538.77 temperature 25 30 > th dose independent rect. 4 3
27 542.59 humidity 90 10 < th dose dependent rect. 2 5
35 545.66 wind 7 4320 > th dose independent rect. 8 2
42 546.56 wind 5 4320 > th dose dependent rect. 22 1
56 549.70 wind 7 4320 < th dose independent rect. 8 2
58 550.65 temperature 15 270 > th dose dependent rect. 2 5
62 551.11 wind 5 4320 > th dose independent rect. 22 1
73 554.33 wind 5 1440 > th dose dependent rect. 15 19
78 554.80 wind 5 4320 < th dose independent rect. 22 1
79 554.95 humidity 90 10 < th dose independent rect. 15 17
83 555.38 temperature 20 270 > th dose independent rect. 3 4
86 556.18 wind 1 270 > th dose independent rect. 3 4
90 556.38 wind 5 1440 > th dose independent rect. 15 19
92 556.62 humidity 70 10 > th dose dependent rect. 20 10
95 556.93 wind 5 1440 > th dose dependent rect. 15 22
96 556.97 wind 7 4320 > th dose dependent rect. 8 1
98 557.07 wind 9 1440 < th dose independent rect. 23 6
108 557.63 wind 5 1440 > th dose dependent rect. 12 22
115 557.96 wind 1 90 > th dose independent rect. 15 16
116 558.10 wind 5 1440 > th dose independent rect. 12 22
119 558.20 humidity 50 270 > th dose dependent rect. 18 9
133 558.62 wind 5 1440 < th dose independent rect. 15 20
145 559.24 wind 5 1440 > th dose dependent rect. 21 23
149 559.49 humidity 90 1440 < th dose dependent rect. 1 1
161 559.95 wind 5 1440 > th dose dependent rect. 6 23
169 560.22 wind 5 1440 < th dose independent rect. 13 22
171 560.24 wind 5 1440 > th dose independent rect. 18 23
172 560.26 wind 5 1440 > th dose dependent no NA NA
177 560.32 humidity 90 10 < th dose independent rect. 2 18
181 560.39 wind 5 1440 > th dose independent rect. 6 23
185 560.45 wind 5 1440 > th dose dependent rect. 4 23
190 560.52 wind 5 1440 > th dose dependent rect. 2 23
211 560.78 wind 5 1440 > th dose dependent rect. 24 23
215 560.86 wind 5 1440 > th dose independent rect. 4 23
219 560.89 wind 5 1440 > th dose independent no NA NA
250 561.35 wind 5 4320 > th dose independent rect. 18 11
257 561.44 wind 5 1440 > th dose independent rect. 21 23
266 561.60 wind 5 1440 < th dose independent rect. 15 23
280 561.89 wind 5 1440 > th dose independent sin 14 NA
288 562.03 wind 9 4320 > th dose dependent rect. 12 1
289 562.03 wind 5 4320 > th dose dependent rect. 18 10
298 562.19 wind 1 270 > th dose independent rect. 4 1
312 562.33 wind 5 1440 > th dose dependent rect. 15 14
321 562.43 wind 5 1440 < th dose independent rect. 7 22
336 562.68 wind 5 1440 < th dose independent rect. 18 23
344 562.77 radiation 1 90 > th dose independent rect. 17 14
352 562.86 wind 7 270 < th dose independent rect. 18 9
356 562.94 wind 5 1440 > th dose dependent sin 14 NA
366 563.07 wind 5 1440 < th dose independent rect. 4 23
371 563.09 wind 5 1440 < th dose independent no NA NA
372 563.09 wind 5 4320 < th dose independent rect. 18 10
405 563.46 wind 7 270 < th dose independent rect. 7 20
414 563.61 wind 5 1440 < th dose independent sin 13 NA
420 563.66 wind 5 1440 < th dose independent rect. 20 23
434 563.80 wind 5 1440 > th dose dependent rect. 11 18
477 564.33 wind 9 270 < th dose dependent rect. 18 9
482 564.38 wind 9 4320 > th dose dependent rect. 16 2
488 564.49 wind 5 1440 > th dose independent rect. 15 14
529 564.97 wind 7 4320 < th dose independent rect. 19 1
550 565.16 wind 5 4320 > th dose dependent rect. 18 5
570 565.46 wind 9 4320 > th dose dependent rect. 16 4
580 565.62 wind 1 90 > th dose independent rect. 6 1
587 565.70 atmosphere 1005 270 > th dose independent rect. 3 4
616 566.13 wind 9 4320 > th dose dependent rect. 16 6
621 566.17 atmosphere 1005 90 > th dose independent rect. 6 1
636 566.34 wind 5 1440 < th dose independent rect. 15 14
637 566.34 wind 1 90 > th dose independent rect. 4 16
698 566.93 temperature 30 720 < th dose dependent rect. 19 8
712 567.05 radiation 20 90 < th dose independent rect. 6 1
731 567.22 wind 5 1440 < th dose independent rect. 12 17
762 567.47 wind 9 4320 > th dose independent rect. 16 1
773 567.61 humidity 80 90 > th dose independent rect. 20 9
789 567.81 temperature 20 90 > th dose independent rect. 6 1
792 567.82 temperature 20 10 > th dose dependent rect. 17 15
797 567.86 wind 7 4320 > th dose independent rect. 19 1
807 567.98 wind 5 1440 > th dose dependent rect. 18 2
839 568.40 temperature 10 720 > th dose dependent rect. 19 10
849 568.52 humidity 70 90 > th dose independent rect. 6 1
872 568.72 wind 9 4320 < th dose independent rect. 16 13
898 568.97 temperature 10 90 > th dose dependent rect. 6 1
915 569.10 radiation 30 270 < th dose independent rect. 13 18
917 569.12 temperature 30 10 < th dose dependent rect. 6 1
928 569.23 wind 7 1440 > th dose independent rect. 22 12
971 569.56 radiation 1 90 > th dose independent rect. 6 1
983 569.60 wind 9 90 < th dose independent rect. 7 23
990 569.62 radiation 20 10 < th dose dependent rect. 6 1
996 569.69 wind 1 90 > th dose dependent rect. 6 1