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Os01g0590900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Protein kinase AFC3 (EC 2.7.1.-).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.3 (0.0144) R2 : 0.583
β1 : -0.962 (0.0528) R2dD : 0.316 R2D : 0.325
β2 : 0.596 (0.0374) R2dC : 0.234 R2C : 0.225
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.116 (0.0308) R2dN8 : 0.0174 R2N8 : 0.0392
σ : 0.271
deviance : 33.48
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_____
C
peak time of C : 6.93
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
28.72 0.252 10.3 -0.97 0.392 -0.417 -0.0863 -0.784 0.155 8.04 37.63 540 -- --
29.64 0.254 10.3 -0.936 0.4 -0.432 0.0262 -- 0.169 8.03 37.44 540 -- --
28.71 0.25 10.3 -0.969 0.399 -0.416 -- -0.772 0.156 8.02 37.29 528 -- --
29.64 0.254 10.3 -0.94 0.398 -0.438 -- -- 0.167 8.07 37.46 540 -- --
33.92 0.271 10.3 -0.952 -- -0.591 -- -0.519 0.202 -- 37.2 680 -- --
33.18 0.27 10.3 -0.969 0.595 -- 0.343 -- 0.117 6.86 -- -- -- --
33.48 0.271 10.3 -0.962 0.596 -- -- -- 0.116 6.93 -- -- -- --
34.69 0.274 10.3 -0.933 -- -0.614 -- -- 0.21 -- 37.39 677 -- --
51.49 0.334 10.2 -- 0.367 -0.518 -- -- 0.305 8.28 30.58 544 -- --
52.11 0.337 10.3 -0.95 -- -- -- -- 0.127 -- -- -- -- --
57.89 0.356 10.2 -- 0.585 -- -- -- 0.223 7.03 -- -- -- --
54.19 0.343 10.2 -- -- -0.732 -- -- 0.311 -- 20 733 -- --
75.91 0.407 10.2 -- -- -- -- -- 0.232 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 27.08 radiation 10.0 4320 < th dose dependent rect. 7 2
2 27.08 radiation 10.0 4320 < th dose dependent rect. 7 4
4 27.16 precipitation 0.1 14400 < th dose independent rect. 5 2
5 27.16 precipitation 0.1 14400 < th dose dependent rect. 5 2
6 27.17 atmosphere 1005.0 43200 > th dose independent rect. 11 1
7 27.17 atmosphere 1005.0 43200 < th dose independent rect. 1 3
9 27.18 atmosphere 1005.0 43200 < th dose independent rect. 3 1
12 27.19 precipitation 0.1 14400 > th dose independent rect. 5 2
16 27.22 atmosphere 1005.0 43200 > th dose independent rect. 1 3
17 27.23 precipitation 0.1 14400 > th dose dependent rect. 5 2
20 27.24 radiation 1.0 4320 > th dose independent rect. 6 9
22 27.25 atmosphere 1005.0 43200 > th dose independent rect. 3 1
27 27.27 atmosphere 1005.0 43200 < th dose independent rect. 11 2
28 27.27 radiation 1.0 4320 < th dose independent rect. 6 9
34 27.35 temperature 25.0 14400 > th dose independent rect. 11 1
39 27.40 temperature 25.0 14400 < th dose independent rect. 11 1
41 27.40 atmosphere 1005.0 43200 < th dose independent rect. 23 5
46 27.44 precipitation 0.1 14400 > th dose independent rect. 4 9
49 27.45 precipitation 0.1 14400 < th dose independent rect. 4 9
50 27.45 precipitation 0.1 14400 < th dose dependent rect. 4 9
53 27.46 precipitation 0.1 14400 < th dose independent rect. 4 7
55 27.46 precipitation 0.1 14400 < th dose dependent rect. 4 7
56 27.47 precipitation 0.1 14400 < th dose independent rect. 5 5
57 27.47 precipitation 0.1 14400 > th dose independent rect. 4 7
58 27.47 precipitation 0.1 14400 > th dose dependent rect. 5 5
59 27.47 precipitation 0.1 14400 < th dose dependent rect. 5 5
60 27.48 temperature 25.0 14400 > th dose independent rect. 8 5
61 27.48 precipitation 0.1 14400 > th dose dependent rect. 4 9
70 27.51 radiation 1.0 4320 > th dose independent rect. 6 4
71 27.51 precipitation 0.1 14400 > th dose independent rect. 5 5
77 27.53 radiation 1.0 4320 < th dose independent rect. 6 4
84 27.54 temperature 25.0 14400 < th dose independent rect. 8 5
123 27.61 atmosphere 1005.0 43200 < th dose independent rect. 23 1
148 27.66 atmosphere 1005.0 43200 < th dose independent rect. 18 10
188 27.73 precipitation 0.1 14400 < th dose independent rect. 4 11
189 27.73 atmosphere 1005.0 43200 < th dose independent rect. 11 18
191 27.73 precipitation 0.1 14400 < th dose dependent rect. 4 11
207 27.76 precipitation 0.1 14400 > th dose independent rect. 4 11
220 27.77 atmosphere 1005.0 43200 > th dose independent rect. 18 11
225 27.77 temperature 20.0 14400 > th dose dependent rect. 9 1
239 27.79 humidity 90.0 14400 > th dose independent rect. 13 1
245 27.79 wind 9.0 14400 < th dose independent rect. 2 11
262 27.81 wind 9.0 43200 > th dose independent rect. 18 1
277 27.81 temperature 20.0 14400 > th dose dependent rect. 8 4
304 27.83 temperature 20.0 14400 > th dose dependent rect. 11 1
318 27.84 atmosphere 1005.0 43200 > th dose independent rect. 10 19
319 27.84 temperature 30.0 14400 < th dose dependent rect. 9 1
321 27.85 atmosphere 1005.0 43200 < th dose independent sin 13 NA
401 27.89 wind 9.0 14400 > th dose dependent rect. 3 10
405 27.90 temperature 25.0 14400 > th dose independent sin 2 NA
455 27.92 atmosphere 1005.0 43200 < th dose independent rect. 22 19
489 27.93 atmosphere 1005.0 43200 < th dose independent rect. 18 23
490 27.93 wind 1.0 43200 < th dose dependent rect. 6 1
491 27.93 wind 9.0 14400 < th dose dependent rect. 14 1
521 27.95 temperature 25.0 14400 < th dose independent sin 2 NA
546 27.96 atmosphere 1005.0 43200 > th dose independent sin 13 NA
548 27.96 atmosphere 1005.0 43200 < th dose independent no NA NA
551 27.96 wind 9.0 14400 < th dose independent rect. 4 8
565 27.96 atmosphere 1005.0 43200 < th dose independent rect. 1 23
567 27.96 wind 1.0 14400 > th dose dependent rect. 14 1
568 27.96 wind 9.0 43200 > th dose dependent rect. 18 1
578 27.97 atmosphere 1005.0 43200 < th dose independent rect. 18 6
585 27.97 atmosphere 1005.0 43200 < th dose independent rect. 1 16
588 27.97 atmosphere 1005.0 43200 > th dose independent rect. 22 19
598 27.97 atmosphere 1005.0 43200 < th dose independent rect. 15 23
637 27.99 wind 5.0 14400 < th dose independent rect. 14 1
638 27.99 wind 9.0 43200 < th dose independent rect. 18 1
649 27.99 atmosphere 1005.0 43200 > th dose independent rect. 1 16
664 27.99 atmosphere 1005.0 43200 < th dose independent rect. 13 23
700 28.01 wind 1.0 43200 > th dose independent rect. 5 2
723 28.01 atmosphere 1005.0 43200 > th dose independent rect. 18 23
768 28.03 wind 5.0 14400 > th dose independent rect. 14 1
795 28.03 atmosphere 1005.0 43200 > th dose independent rect. 16 22
805 28.04 atmosphere 1005.0 43200 > th dose independent no NA NA
829 28.04 atmosphere 1005.0 43200 > th dose independent rect. 18 20
835 28.04 atmosphere 1005.0 43200 > th dose independent rect. 1 23
871 28.05 temperature 30.0 270 < th dose dependent rect. 22 8
942 28.07 atmosphere 1005.0 43200 > th dose independent rect. 13 23