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Os01g0588500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Avr9/Cf-9 induced kinase 1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.21 (0.0204) R2 : 0.685
β1 : 1.76 (0.0749) R2dD : 0.396 R2D : 0.388
β2 : 0.992 (0.0487) R2dC : 0.288 R2C : 0.3
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.138 (0.0436) R2dN8 : 0.00932 R2N8 : -0.012
σ : 0.384
deviance : 67.37
__
_____
C
peak time of C : 0.858
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
54.32 0.346 7.15 2.06 0.711 0.943 -0.287 -0.477 0.351 0.219 29.5 28 -- --
54.52 0.347 7.16 1.97 0.697 0.943 -0.424 -- 0.324 0.285 29.56 19 -- --
54.54 0.347 7.15 2.1 0.707 0.926 -- -0.722 0.355 0.319 29.6 19 -- --
55.3 0.349 7.16 1.98 0.701 0.934 -- -- 0.324 0.284 29.6 19 -- --
77.18 0.411 7.11 2.25 -- 1.58 -- -0.615 0.48 -- 29.8 4 -- --
66.87 0.383 7.21 1.75 0.992 -- -0.343 -- 0.137 0.853 -- -- -- --
67.37 0.384 7.21 1.76 0.992 -- -- -- 0.138 0.858 -- -- -- --
77.71 0.412 7.12 2.15 -- 1.57 -- -- 0.452 -- 29.8 4 -- --
148.72 0.571 7.24 -- 0.981 0.123 -- -- -0.0363 0.885 29.6 19 -- --
128.81 0.53 7.19 1.8 -- -- -- -- 0.157 -- -- -- -- --
148.95 0.571 7.25 -- 1.02 -- -- -- -0.0575 0.935 -- -- -- --
191.87 0.647 7.2 -- -- 1.01 -- -- 0.118 -- 30.1 5 -- --
213.88 0.683 7.23 -- -- -- -- -- -0.0423 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 50.46 wind 9.0 43200 > th dose dependent rect. 17 7
6 50.67 wind 9.0 43200 > th dose dependent rect. 17 4
12 51.27 wind 7.0 43200 > th dose independent rect. 20 1
14 51.48 wind 7.0 43200 > th dose dependent rect. 20 1
15 51.53 wind 7.0 43200 < th dose independent rect. 20 1
20 51.79 wind 9.0 43200 > th dose independent rect. 17 10
24 51.85 wind 9.0 43200 > th dose independent rect. 17 7
30 52.06 wind 9.0 43200 < th dose independent rect. 18 9
33 52.08 wind 9.0 43200 < th dose independent rect. 18 6
40 52.15 wind 9.0 43200 > th dose dependent rect. 20 3
45 52.22 wind 9.0 43200 > th dose independent rect. 17 4
50 52.28 wind 9.0 43200 < th dose independent rect. 18 4
54 52.31 wind 9.0 43200 > th dose independent rect. 17 14
89 52.84 wind 9.0 43200 < th dose independent rect. 17 14
118 53.32 wind 9.0 43200 < th dose independent rect. 20 5
129 53.39 wind 9.0 43200 > th dose dependent sin 13 NA
144 53.66 temperature 10.0 720 > th dose dependent rect. 20 21
159 53.80 temperature 10.0 720 > th dose dependent rect. 12 23
171 53.95 temperature 30.0 30 < th dose dependent rect. 9 23
174 54.00 wind 9.0 43200 > th dose independent sin 12 NA
198 54.16 temperature 30.0 10 < th dose dependent rect. 17 23
207 54.22 wind 9.0 43200 < th dose independent sin 12 NA
214 54.25 temperature 30.0 30 < th dose dependent rect. 11 23
218 54.27 temperature 30.0 720 < th dose dependent rect. 24 21
220 54.29 temperature 30.0 30 < th dose dependent rect. 15 23
227 54.32 atmosphere 1000.0 43200 < th dose dependent rect. 3 1
235 54.36 temperature 10.0 720 > th dose dependent rect. 1 23
236 54.36 temperature 30.0 30 < th dose dependent rect. 13 23
239 54.37 temperature 20.0 90 > th dose dependent rect. 12 23
248 54.41 temperature 30.0 30 < th dose dependent no NA NA
254 54.43 temperature 10.0 720 > th dose dependent rect. 3 21
264 54.44 temperature 10.0 720 > th dose dependent rect. 3 23
284 54.51 temperature 15.0 720 > th dose dependent rect. 1 16
292 54.54 temperature 30.0 90 < th dose dependent rect. 21 23
293 54.55 radiation 10.0 14400 < th dose independent rect. 17 3
297 54.56 radiation 10.0 14400 < th dose independent rect. 17 7
298 54.56 radiation 10.0 14400 < th dose independent rect. 17 12
304 54.58 radiation 10.0 14400 < th dose independent rect. 17 9
338 54.67 temperature 15.0 720 > th dose dependent rect. 23 23
352 54.71 atmosphere 1000.0 43200 < th dose independent rect. 3 1
357 54.72 temperature 10.0 720 > th dose dependent no NA NA
358 54.72 precipitation 0.1 43200 > th dose dependent rect. 17 1
359 54.72 humidity 60.0 14400 < th dose dependent rect. 17 3
377 54.74 temperature 15.0 30 > th dose dependent rect. 1 23
394 54.78 temperature 10.0 720 > th dose dependent rect. 10 23
399 54.79 temperature 10.0 90 > th dose dependent no NA NA
404 54.79 temperature 15.0 10 > th dose dependent rect. 23 23
438 54.86 atmosphere 1000.0 43200 > th dose independent rect. 3 1
461 54.91 humidity 60.0 14400 < th dose independent rect. 17 3
462 54.91 atmosphere 995.0 43200 < th dose dependent rect. 15 1
464 54.91 radiation 10.0 14400 > th dose dependent rect. 17 13
479 54.92 temperature 30.0 720 < th dose dependent rect. 17 21
482 54.93 atmosphere 995.0 43200 < th dose independent rect. 14 1
520 54.99 radiation 10.0 14400 > th dose dependent rect. 17 1
557 55.04 temperature 20.0 30 > th dose dependent rect. 1 21
560 55.05 humidity 60.0 14400 > th dose independent rect. 18 1
570 55.06 temperature 15.0 720 > th dose dependent sin 3 NA
593 55.09 radiation 20.0 4320 > th dose dependent rect. 16 15
627 55.14 atmosphere 995.0 43200 > th dose independent rect. 11 5
642 55.16 humidity 60.0 14400 > th dose independent rect. 18 14
649 55.17 humidity 60.0 14400 < th dose independent rect. 18 1
666 55.18 wind 7.0 43200 > th dose independent rect. 15 19
689 55.20 temperature 30.0 720 < th dose dependent rect. 13 23
745 55.25 temperature 30.0 720 < th dose dependent rect. 7 23
746 55.26 humidity 60.0 14400 > th dose independent rect. 18 3
748 55.26 humidity 60.0 14400 > th dose independent rect. 18 6
763 55.27 temperature 30.0 720 < th dose dependent no NA NA
781 55.29 precipitation 0.1 43200 < th dose independent rect. 17 1
786 55.29 precipitation 0.1 43200 < th dose dependent rect. 17 1
808 55.31 humidity 60.0 14400 > th dose independent rect. 18 8
826 55.32 temperature 30.0 90 < th dose dependent rect. 7 23
827 55.33 precipitation 0.1 43200 > th dose independent rect. 17 1
856 55.35 temperature 30.0 10 < th dose dependent rect. 17 21
918 55.42 humidity 50.0 14400 < th dose dependent rect. 16 19
965 55.46 temperature 20.0 30 > th dose dependent rect. 5 17
977 55.47 temperature 30.0 30 < th dose dependent rect. 19 23
990 55.48 temperature 30.0 720 < th dose dependent rect. 4 23