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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0585400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.47 (0.0311) R2 : 0.535
β1 : 2.18 (0.114) R2dD : 0.387 R2D : 0.347
β2 : 0.896 (0.0755) R2dC : 0.144 R2C : 0.149
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.363 (0.0663) R2dN8 : 0.041 R2N8 : -0.00746
σ : 0.584
deviance : 155.61
__
_____
C
peak time of C : 2.13
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
139.35 0.555 5.38 2.79 0.921 0.26 -0.366 -2.2 0.569 2.15 20.5 1366 -- --
143.6 0.558 5.43 2.42 0.924 1.14 -0.516 -- 0.446 2.19 16.4 2297 -- --
139.73 0.551 5.38 2.8 0.915 0.262 -- -2.2 0.57 2.18 20.57 1413 -- --
143.17 0.557 5.45 2.48 0.929 1.38 -- -- 0.462 2.12 16.46 2225 -- --
184.02 0.635 5.42 2.52 -- 0.524 -- -0.925 0.529 -- 20.57 1413 -- --
155.52 0.585 5.47 2.17 0.896 -- -0.156 -- 0.362 2.11 -- -- -- --
155.61 0.584 5.47 2.18 0.896 -- -- -- 0.363 2.13 -- -- -- --
188.61 0.642 5.44 2.36 -- 0.57 -- -- 0.492 -- 20.57 1413 -- --
280.13 0.784 5.53 -- 0.936 -0.192 -- -- 0.118 2.18 16.46 2225 -- --
203.68 0.667 5.46 2.21 -- -- -- -- 0.384 -- -- -- -- --
280.31 0.783 5.53 -- 0.938 -- -- -- 0.121 2.18 -- -- -- --
283.87 0.785 5.51 -- -- -1.22 -- -- 0.381 -- 11.8 26858 -- --
332.82 0.852 5.52 -- -- -- -- -- 0.139 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 133.36 humidity 50.0 14400 < th dose dependent rect. 17 18
2 133.58 temperature 20.0 90 > th dose independent rect. 2 18
5 134.28 humidity 70.0 14400 < th dose dependent rect. 19 13
18 135.85 wind 3.0 43200 < th dose dependent rect. 4 4
27 136.53 wind 3.0 43200 < th dose dependent rect. 24 8
28 136.54 precipitation 0.1 14400 > th dose dependent rect. 19 1
29 136.58 precipitation 0.1 14400 > th dose independent rect. 19 1
30 136.59 temperature 20.0 30 > th dose independent rect. 2 21
33 136.67 precipitation 0.1 14400 < th dose independent rect. 19 1
34 136.67 precipitation 0.1 14400 < th dose dependent rect. 19 1
39 136.87 radiation 1.0 4320 < th dose dependent rect. 7 3
42 136.94 radiation 1.0 4320 > th dose independent rect. 7 4
44 136.99 temperature 20.0 1440 < th dose dependent rect. 2 1
47 137.06 radiation 1.0 4320 < th dose independent rect. 7 4
52 137.14 humidity 60.0 14400 < th dose dependent rect. 18 15
53 137.15 temperature 20.0 1440 > th dose independent rect. 4 8
55 137.16 humidity 80.0 14400 > th dose dependent rect. 21 1
57 137.19 temperature 20.0 1440 < th dose independent rect. 4 8
66 137.34 temperature 10.0 270 > th dose dependent rect. 23 21
67 137.35 humidity 50.0 14400 < th dose independent rect. 17 18
70 137.36 humidity 80.0 14400 > th dose dependent rect. 20 3
76 137.48 humidity 50.0 14400 > th dose independent rect. 17 17
84 137.55 temperature 20.0 720 < th dose dependent rect. 20 16
87 137.57 temperature 20.0 720 < th dose dependent rect. 21 14
89 137.58 temperature 20.0 720 > th dose independent rect. 20 17
91 137.60 wind 3.0 43200 < th dose independent rect. 5 2
101 137.65 temperature 15.0 720 > th dose dependent rect. 20 17
115 137.74 humidity 60.0 14400 < th dose independent rect. 18 15
120 137.78 temperature 20.0 1440 < th dose dependent rect. 2 7
132 137.84 wind 3.0 43200 < th dose dependent rect. 1 13
136 137.86 wind 9.0 43200 < th dose dependent rect. 5 3
138 137.87 temperature 15.0 720 > th dose dependent rect. 16 20
140 137.88 temperature 15.0 720 > th dose dependent rect. 16 17
155 137.94 wind 3.0 43200 < th dose dependent sin 6 NA
160 137.96 wind 1.0 43200 > th dose dependent rect. 5 2
166 137.98 wind 3.0 43200 > th dose independent rect. 5 2
178 138.01 temperature 30.0 1440 < th dose dependent rect. 6 1
198 138.08 wind 3.0 43200 < th dose dependent rect. 4 9
205 138.10 temperature 20.0 720 < th dose dependent sin 8 NA
209 138.11 precipitation 0.1 43200 > th dose dependent rect. 3 1
215 138.13 humidity 80.0 43200 > th dose independent rect. 6 1
223 138.14 temperature 15.0 1440 > th dose dependent rect. 6 1
226 138.14 humidity 80.0 14400 > th dose dependent rect. 19 7
241 138.19 humidity 90.0 14400 < th dose independent rect. 20 1
266 138.25 temperature 15.0 4320 < th dose dependent rect. 11 2
273 138.26 temperature 20.0 720 > th dose independent sin 6 NA
274 138.26 humidity 90.0 14400 > th dose independent rect. 20 2
286 138.28 temperature 10.0 1440 > th dose dependent rect. 2 1
298 138.30 wind 5.0 43200 < th dose dependent rect. 18 14
300 138.31 temperature 20.0 1440 < th dose dependent rect. 6 1
311 138.33 temperature 15.0 4320 < th dose dependent rect. 10 7
325 138.35 wind 9.0 43200 < th dose dependent rect. 18 14
368 138.44 temperature 20.0 1440 < th dose dependent rect. 5 3
372 138.44 temperature 30.0 30 < th dose dependent rect. 4 22
388 138.48 temperature 20.0 1440 > th dose independent rect. 8 1
394 138.49 humidity 80.0 1440 > th dose dependent rect. 10 1
405 138.50 wind 1.0 43200 > th dose dependent rect. 18 14
407 138.51 radiation 1.0 4320 > th dose independent rect. 8 1
409 138.52 temperature 20.0 1440 < th dose independent rect. 8 1
418 138.54 temperature 15.0 4320 < th dose independent rect. 11 2
442 138.57 wind 3.0 43200 < th dose independent rect. 1 7
444 138.57 humidity 60.0 43200 < th dose dependent rect. 14 1
450 138.58 temperature 20.0 720 > th dose independent rect. 16 20
456 138.59 temperature 15.0 720 > th dose dependent sin 10 NA
467 138.61 temperature 10.0 30 > th dose dependent rect. 2 18
518 138.71 temperature 20.0 1440 < th dose independent sin 4 NA
529 138.72 radiation 1.0 4320 < th dose independent rect. 8 1
538 138.73 temperature 20.0 1440 > th dose independent sin 4 NA
567 138.77 temperature 25.0 1440 < th dose dependent rect. 5 7
578 138.79 temperature 30.0 30 < th dose dependent rect. 9 17
652 138.88 temperature 10.0 1440 > th dose dependent rect. 24 16
733 138.97 wind 3.0 43200 > th dose independent rect. 1 7
744 138.98 humidity 60.0 14400 > th dose independent rect. 16 4
746 138.98 humidity 60.0 14400 > th dose independent rect. 16 13
751 138.98 humidity 60.0 14400 < th dose dependent rect. 18 3
784 139.00 humidity 60.0 14400 > th dose independent rect. 16 10
787 139.00 humidity 90.0 90 < th dose independent rect. 2 18
807 139.02 humidity 80.0 43200 < th dose independent rect. 22 3
809 139.02 temperature 10.0 1440 > th dose dependent rect. 24 12
815 139.03 humidity 80.0 43200 < th dose independent rect. 23 1
844 139.05 humidity 60.0 14400 < th dose independent rect. 16 4
855 139.05 wind 3.0 43200 < th dose independent rect. 17 15
860 139.05 temperature 15.0 1440 > th dose dependent sin 4 NA
882 139.07 temperature 15.0 1440 > th dose dependent rect. 5 10
896 139.09 wind 3.0 43200 < th dose independent rect. 24 16
924 139.11 wind 1.0 43200 > th dose dependent rect. 23 9
1000 139.16 temperature 10.0 1440 > th dose dependent rect. 6 6