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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0584300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.84 (0.0383) R2 : 0.21
β1 : 0.903 (0.147) R2dD : 0.0776 R2D : 0.014
β2 : 0.599 (0.0924) R2dC : 0.0751 R2C : 0.0967
β3 : 1.27 (0.191) R2dE : 0.0991 R2E : 0.0595
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.179 (0.0868) R2dN8 : 0.0116 R2N8 : -0.0206
σ : 0.702
deviance : 227.5
__
_____
C
peak time of C : 14
E
wheather : temperature
threshold : 23.51
memory length : 797
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
227.2 0.708 3.84 0.891 0.598 1.28 0.273 0.0445 0.178 14 23.52 799 -- --
227.2 0.702 3.84 0.896 0.598 1.27 0.279 -- 0.18 14 23.5 799 -- --
227.46 0.702 3.85 0.879 0.597 1.3 -- 0.177 0.174 14 23.46 803 -- --
227.5 0.702 3.84 0.903 0.599 1.27 -- -- 0.179 14 23.51 797 -- --
247.52 0.733 3.84 0.894 -- 1.49 -- 0.342 0.217 -- 24.2 901 -- --
248.75 0.739 3.89 0.554 0.703 -- 0.169 -- -0.0427 13.4 -- -- -- --
248.87 0.739 3.89 0.56 0.703 -- -- -- -0.0418 13.4 -- -- -- --
247.65 0.733 3.83 0.949 -- 1.43 -- -- 0.24 -- 24.8 919 -- --
246.25 0.731 3.87 -- 0.62 0.856 -- -- 0.0103 13.8 23.61 777 -- --
279.27 0.781 3.9 0.532 -- -- -- -- -0.0566 -- -- -- -- --
257.13 0.75 3.9 -- 0.693 -- -- -- -0.104 13.4 -- -- -- --
268.33 0.763 3.87 -- -- 1.03 -- -- 0.0545 -- 24.3 856 -- --
286.73 0.79 3.91 -- -- -- -- -- -0.116 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 213.94 wind 9 43200 > th dose independent rect. 18 16
2 214.16 wind 9 43200 > th dose dependent rect. 18 15
4 214.65 wind 9 43200 > th dose dependent rect. 14 21
8 214.97 wind 9 43200 < th dose independent rect. 18 16
9 214.99 wind 9 43200 > th dose dependent rect. 18 21
12 215.32 wind 9 43200 > th dose dependent sin 11 NA
13 215.34 temperature 10 720 > th dose dependent rect. 2 12
15 215.40 wind 9 43200 > th dose dependent rect. 17 17
21 215.47 temperature 10 720 > th dose dependent rect. 2 8
47 215.95 wind 9 43200 > th dose dependent rect. 22 23
52 216.01 wind 9 43200 > th dose dependent rect. 4 21
61 216.05 wind 9 43200 > th dose dependent no NA NA
62 216.05 wind 9 43200 > th dose dependent rect. 4 17
131 216.29 wind 9 43200 > th dose dependent rect. 22 17
148 216.40 wind 9 43200 > th dose dependent rect. 4 11
159 216.43 wind 9 43200 > th dose dependent sin 2 NA
176 216.61 wind 9 43200 > th dose dependent rect. 10 23
177 216.62 temperature 30 720 < th dose dependent rect. 5 6
181 216.67 wind 7 43200 > th dose dependent rect. 6 1
185 216.76 atmosphere 995 43200 < th dose dependent rect. 7 15
187 216.77 atmosphere 995 43200 < th dose dependent rect. 5 14
201 216.82 atmosphere 995 43200 < th dose dependent rect. 7 12
265 217.17 temperature 10 720 > th dose dependent rect. 22 16
267 217.18 wind 9 43200 > th dose independent rect. 16 19
268 217.20 atmosphere 995 43200 < th dose dependent sin 23 NA
277 217.29 wind 9 43200 > th dose independent sin 9 NA
338 217.68 temperature 30 720 < th dose dependent rect. 7 2
342 217.77 atmosphere 995 43200 > th dose independent rect. 7 6
343 217.79 wind 7 43200 > th dose independent rect. 6 2
351 217.89 wind 7 43200 > th dose dependent rect. 9 1
354 217.95 wind 7 43200 > th dose dependent rect. 5 5
357 218.02 wind 7 43200 < th dose independent rect. 6 2
359 218.05 wind 9 43200 > th dose independent rect. 14 21
367 218.17 wind 9 43200 < th dose independent rect. 23 2
372 218.23 wind 9 43200 > th dose independent rect. 6 9
382 218.34 temperature 15 720 > th dose dependent sin 7 NA
388 218.40 wind 9 43200 < th dose independent sin 9 NA
397 218.45 wind 9 43200 > th dose independent rect. 8 6
401 218.49 wind 9 43200 > th dose independent rect. 23 16
435 218.67 wind 9 43200 < th dose independent rect. 6 9
446 218.71 temperature 25 720 < th dose dependent rect. 24 11
460 218.78 wind 9 43200 < th dose independent rect. 7 7
484 218.88 temperature 15 720 > th dose dependent rect. 2 3
490 218.90 wind 9 43200 < th dose independent rect. 14 21
507 218.93 wind 9 43200 > th dose independent rect. 23 13
510 218.94 wind 9 43200 > th dose independent rect. 23 2
527 218.99 wind 9 43200 < th dose independent rect. 23 16
574 219.15 wind 9 43200 > th dose dependent rect. 23 2
583 219.17 wind 9 43200 > th dose independent rect. 9 1
614 219.26 wind 9 43200 > th dose independent rect. 23 20
689 219.53 wind 9 43200 > th dose independent rect. 5 19
739 219.64 atmosphere 995 43200 < th dose independent rect. 7 8
792 219.80 atmosphere 995 43200 > th dose independent rect. 6 16
811 219.85 atmosphere 995 43200 < th dose independent rect. 7 16
823 219.87 wind 9 43200 > th dose independent no NA NA
825 219.87 atmosphere 995 43200 > th dose independent rect. 5 14
865 219.94 atmosphere 995 43200 < th dose independent rect. 5 14
911 220.04 atmosphere 995 43200 > th dose independent sin 22 NA
921 220.05 atmosphere 995 43200 < th dose independent sin 21 NA
950 220.09 humidity 90 14400 > th dose dependent rect. 22 2