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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0583300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.2 (0.0493) R2 : 0.616
β1 : -3.43 (0.18) R2dD : 0.318 R2D : 0.325
β2 : 1.76 (0.128) R2dC : 0.161 R2C : 0.159
β3 : 1.54 (0.121) R2dE : 0.137 R2E : 0.127
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0897 (0.105) R2dN8 : 0.00081 R2N8 : 0.00422
σ : 0.921
deviance : 391.28
__
_____
C
peak time of C : 18.7
E
wheather : humidity
threshold : 78.4
memory length : 120
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 21.3
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
377.15 0.912 5.19 -3.44 1.81 1.52 -1.93 -1.49 0.0924 18.6 80 145 21.8 --
384.42 0.913 5.19 -3.46 1.81 1.41 -2 -- 0.0845 18.3 80 142 21.7 --
385.65 0.915 5.2 -3.44 1.75 1.56 -- -1.44 0.0834 18.7 78.92 152 21.6 --
391.28 0.921 5.2 -3.43 1.76 1.54 -- -- 0.0897 18.7 78.4 120 21.3 --
431.18 0.967 5.18 -3.26 -- 2.42 -- -2.2 -0.0638 -- 89 562 19.9 --
435.65 0.979 5.18 -3.37 2.13 -- -2.3 -- 0.0921 16.6 -- -- -- --
449.7 0.993 5.18 -3.39 2.11 -- -- -- 0.0801 16.6 -- -- -- --
431.07 0.967 5.16 -3.43 -- 2.12 -- -- -0.035 -- 89.34 370 17.2 --
683.44 1.22 5.13 -- 1.8 1.87 -- -- 0.406 19.3 86 260 21.9 --
687.83 1.23 5.17 -3.47 -- -- -- -- 0.0246 -- -- -- -- --
752.32 1.28 5.1 -- 2.18 -- -- -- 0.458 16.5 -- -- -- --
713.61 1.24 5.1 -- -- 2.27 -- -- 0.303 -- 88.7 362 17.3 --
1005.47 1.48 5.08 -- -- -- -- -- 0.41 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 364.56 humidity 80.0 10 < th dose independent rect. 9 6
3 371.01 temperature 10.0 30 > th dose dependent rect. 9 18
4 371.26 temperature 15.0 30 > th dose dependent rect. 9 6
11 372.56 humidity 80.0 90 < th dose independent rect. 7 8
26 376.75 humidity 80.0 270 < th dose independent rect. 9 2
29 376.95 atmosphere 1000.0 270 > th dose independent rect. 2 15
52 378.97 humidity 90.0 10 < th dose dependent rect. 9 6
61 379.72 humidity 80.0 10 < th dose independent rect. 6 9
75 380.14 humidity 70.0 270 > th dose dependent rect. 2 13
80 380.50 humidity 80.0 90 > th dose independent rect. 3 10
82 380.69 humidity 80.0 10 < th dose independent rect. 4 11
88 380.91 humidity 80.0 270 > th dose independent rect. 2 13
91 381.01 humidity 70.0 90 > th dose dependent rect. 3 10
95 381.15 temperature 20.0 30 > th dose independent rect. 9 6
118 382.07 atmosphere 995.0 90 > th dose dependent rect. 3 6
132 382.74 atmosphere 1010.0 30 < th dose independent rect. 9 6
148 383.29 humidity 80.0 90 < th dose independent sin 3 NA
151 383.34 radiation 20.0 30 > th dose independent rect. 9 6
152 383.36 temperature 15.0 270 > th dose dependent rect. 9 2
163 383.57 temperature 15.0 90 > th dose dependent rect. 24 14
184 384.11 humidity 50.0 30 > th dose independent rect. 9 18
195 384.47 temperature 15.0 10 > th dose dependent rect. 1 14
201 384.60 humidity 70.0 90 > th dose dependent sin 2 NA
213 384.84 atmosphere 1000.0 90 > th dose independent rect. 3 6
222 385.06 radiation 30.0 90 < th dose independent rect. 3 6
230 385.13 radiation 30.0 90 < th dose independent rect. 3 8
245 385.44 wind 1.0 10 > th dose independent rect. 15 18
247 385.47 temperature 10.0 270 > th dose dependent rect. 22 14
258 385.75 temperature 15.0 30 > th dose dependent rect. 20 19
270 385.99 humidity 90.0 270 < th dose dependent rect. 9 2
303 386.55 humidity 90.0 90 < th dose dependent rect. 1 14
304 386.59 wind 7.0 10 < th dose independent rect. 9 6
307 386.71 atmosphere 1000.0 10 > th dose independent rect. 5 15
309 386.74 wind 5.0 90 < th dose independent rect. 3 6
316 386.79 atmosphere 1000.0 30 > th dose independent rect. 15 18
324 386.85 humidity 70.0 270 > th dose dependent sin 5 NA
334 387.04 radiation 30.0 90 < th dose independent rect. 3 16
381 387.62 atmosphere 995.0 270 > th dose dependent rect. 3 3
390 387.70 wind 9.0 90 < th dose independent rect. 9 18
402 387.93 atmosphere 995.0 90 > th dose dependent rect. 3 16
403 387.93 humidity 90.0 90 < th dose dependent rect. 20 19
405 387.94 atmosphere 1000.0 10 > th dose independent rect. 3 17
414 388.06 humidity 70.0 90 > th dose independent rect. 3 6
422 388.17 temperature 30.0 90 < th dose dependent rect. 3 16
432 388.26 humidity 80.0 90 > th dose independent sin 2 NA
453 388.41 wind 9.0 30 < th dose independent rect. 15 18
470 388.64 precipitation 0.1 30 < th dose independent rect. 15 18
471 388.64 precipitation 0.1 30 < th dose dependent rect. 15 18
475 388.68 temperature 10.0 1440 > th dose independent rect. 10 6
481 388.68 temperature 10.0 1440 > th dose independent rect. 16 18
485 388.72 precipitation 0.1 30 < th dose independent rect. 9 6
486 388.72 precipitation 0.1 30 < th dose dependent rect. 9 6
495 388.77 atmosphere 995.0 30 > th dose independent rect. 9 6
497 388.77 temperature 10.0 30 > th dose independent rect. 15 18
509 388.88 atmosphere 1015.0 30 < th dose dependent rect. 9 6
511 388.89 radiation 40.0 10 < th dose independent rect. 15 18
516 388.93 temperature 30.0 90 < th dose independent rect. 3 6
517 388.93 wind 9.0 10 < th dose independent rect. 9 18
535 389.11 humidity 50.0 30 > th dose independent rect. 9 6
537 389.14 wind 9.0 14400 > th dose dependent rect. 21 18
538 389.15 precipitation 0.1 30 < th dose independent rect. 3 6
539 389.15 precipitation 0.1 30 < th dose dependent rect. 3 6
561 389.34 humidity 80.0 270 > th dose independent sin 5 NA
577 389.49 wind 9.0 14400 > th dose dependent rect. 21 20
583 389.63 humidity 80.0 10 < th dose independent rect. 20 19
587 389.66 wind 9.0 14400 > th dose dependent sin 5 NA
598 389.72 temperature 10.0 30 > th dose independent rect. 3 6
604 389.72 atmosphere 1015.0 30 < th dose independent rect. 3 6
605 389.72 temperature 10.0 30 > th dose independent rect. 9 18
631 389.92 atmosphere 1000.0 270 > th dose independent rect. 3 3
647 390.03 precipitation 0.1 30 < th dose independent rect. 9 18
648 390.03 precipitation 0.1 30 < th dose dependent rect. 9 18
698 390.44 wind 9.0 90 < th dose dependent rect. 3 6
719 390.59 radiation 20.0 270 < th dose dependent rect. 2 8
739 390.69 atmosphere 995.0 30 > th dose dependent rect. 15 18
753 390.82 humidity 80.0 10 < th dose independent sin 2 NA
754 390.82 temperature 15.0 270 > th dose independent rect. 9 2
775 390.95 radiation 10.0 270 > th dose independent rect. 6 7
807 391.10 temperature 10.0 270 > th dose dependent rect. 17 21
829 391.35 humidity 50.0 90 > th dose dependent rect. 3 6
835 391.37 radiation 1.0 270 < th dose dependent rect. 3 10
868 391.48 radiation 1.0 30 > th dose dependent rect. 9 6
910 391.69 atmosphere 1015.0 30 < th dose independent rect. 15 18
922 391.75 wind 9.0 14400 > th dose independent rect. 21 18
938 391.86 atmosphere 995.0 30 > th dose independent rect. 9 18
964 392.07 atmosphere 995.0 10 > th dose dependent rect. 3 17
966 392.09 wind 1.0 30 > th dose independent rect. 9 6
976 392.17 wind 1.0 270 > th dose independent rect. 2 15
982 392.19 wind 1.0 270 > th dose independent rect. 2 5
992 392.28 radiation 1.0 270 < th dose independent rect. 3 10