Os01g0583100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein phosphatase 2C family protein.
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Os01g0583100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein phosphatase 2C family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 183.16 | 0.636 | 12.3 | -0.46 | 1.56 | -2.06 | -0.76 | -0.911 | -0.0217 | 12 | 74.2 | 1206 | -- | -- |
| 184.83 | 0.633 | 12.3 | -0.536 | 1.56 | -2.06 | -0.832 | -- | -0.0513 | 12 | 74 | 1204 | -- | -- |
| 185.48 | 0.634 | 12.3 | -0.46 | 1.58 | -2.05 | -- | -1.06 | -0.0143 | 11.9 | 74.03 | 1202 | -- | -- |
| 188.35 | 0.639 | 12.3 | -0.62 | 1.55 | -2.09 | -- | -- | -0.0629 | 12 | 74.15 | 1212 | -- | -- |
| 256.23 | 0.746 | 12.3 | -0.438 | -- | -1.94 | -- | -0.953 | 0.0237 | -- | 74.84 | 1575 | -- | -- |
| 305.74 | 0.82 | 12.3 | -0.258 | 1.04 | -- | -1.15 | -- | 0.204 | 11.9 | -- | -- | -- | -- |
| 311.21 | 0.826 | 12.3 | -0.306 | 1.05 | -- | -- | -- | 0.197 | 11.7 | -- | -- | -- | -- |
| 253.42 | 0.741 | 12.4 | -0.614 | -- | -1.96 | -- | -- | -0.0497 | -- | 74.97 | 1540 | -- | -- |
| 198.2 | 0.656 | 12.3 | -- | 1.5 | -1.99 | -- | -- | 0.013 | 12 | 74.78 | 1225 | -- | -- |
| 380.81 | 0.912 | 12.3 | -0.336 | -- | -- | -- | -- | 0.185 | -- | -- | -- | -- | -- |
| 313.68 | 0.828 | 12.3 | -- | 1.06 | -- | -- | -- | 0.231 | 11.7 | -- | -- | -- | -- |
| 260.5 | 0.752 | 12.4 | -- | -- | -2.33 | -- | -- | 0.0524 | -- | 75.9 | 1549 | -- | -- |
| 383.78 | 0.914 | 12.3 | -- | -- | -- | -- | -- | 0.222 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 179.28 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 9 |
| 8 | 181.81 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 15 | 183.17 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 9 |
| 27 | 184.56 | humidity | 80 | 1440 | > th | dose independent | sin | 2 | NA |
| 65 | 187.78 | humidity | 80 | 720 | > th | dose independent | rect. | 7 | 15 |
| 71 | 188.11 | humidity | 80 | 720 | > th | dose independent | rect. | 5 | 17 |
| 88 | 188.89 | humidity | 70 | 720 | > th | dose dependent | rect. | 7 | 16 |
| 90 | 189.01 | humidity | 70 | 720 | > th | dose dependent | rect. | 5 | 18 |
| 133 | 191.05 | humidity | 60 | 720 | > th | dose dependent | rect. | 15 | 8 |
| 225 | 195.08 | humidity | 60 | 1440 | > th | dose dependent | sin | 1 | NA |
| 226 | 195.23 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 20 |
| 269 | 196.10 | humidity | 60 | 1440 | > th | dose dependent | rect. | 6 | 9 |
| 279 | 196.36 | humidity | 70 | 720 | > th | dose dependent | sin | 21 | NA |
| 298 | 196.53 | humidity | 90 | 1440 | < th | dose dependent | rect. | 16 | 22 |
| 323 | 196.79 | humidity | 90 | 720 | < th | dose dependent | rect. | 16 | 17 |
| 370 | 197.17 | humidity | 60 | 720 | > th | dose dependent | sin | 19 | NA |
| 407 | 197.48 | humidity | 90 | 1440 | < th | dose dependent | sin | 3 | NA |
| 426 | 197.65 | humidity | 90 | 1440 | < th | dose dependent | rect. | 2 | 21 |
| 437 | 197.73 | humidity | 90 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 471 | 197.88 | humidity | 50 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 491 | 198.02 | humidity | 50 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 525 | 198.20 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 529 | 198.21 | humidity | 90 | 1440 | < th | dose dependent | rect. | 22 | 23 |
| 547 | 198.33 | humidity | 50 | 1440 | > th | dose dependent | no | NA | NA |
| 575 | 198.47 | humidity | 90 | 1440 | < th | dose dependent | no | NA | NA |
| 582 | 198.52 | humidity | 90 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 668 | 199.02 | humidity | 90 | 1440 | < th | dose dependent | rect. | 3 | 12 |
| 724 | 199.35 | humidity | 50 | 1440 | > th | dose dependent | rect. | 9 | 23 |
| 774 | 199.66 | humidity | 80 | 1440 | < th | dose dependent | sin | 8 | NA |
| 779 | 199.73 | humidity | 90 | 1440 | < th | dose dependent | rect. | 9 | 23 |
| 803 | 199.84 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 808 | 199.85 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 898 | 200.39 | humidity | 90 | 720 | < th | dose dependent | rect. | 16 | 8 |
| 950 | 200.83 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 20 |