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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0581800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3 (0.0255) R2 : 0.129
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.441 (0.0537) R2dN8 : 0.166 R2N8 : 0.129
σ : 0.48
deviance : 105.88
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
91.25 0.449 2.93 0.681 0.402 -0.356 0.0955 4.15 0.569 6.08 26.1 624 -- --
93.5 0.45 2.99 0.116 0.501 0.21 -0.272 -- 0.46 6.01 30.3 413 -- --
91.27 0.445 2.93 0.667 0.403 -0.349 -- 4.04 0.566 6.05 26.1 625 -- --
93.66 0.451 2.99 0.115 0.517 0.243 -- -- 0.465 6.09 30.3 453 -- --
96.57 0.458 2.93 0.788 -- -0.704 -- 4.43 0.613 -- 25.5 507 -- --
94.28 0.455 2.99 0.143 0.454 -- -0.402 -- 0.446 6.11 -- -- -- --
94.68 0.456 2.99 0.139 0.452 -- -- -- 0.448 6.1 -- -- -- --
101.8 0.47 2.99 0.198 -- -0.346 -- -- 0.494 -- 24.5 372 -- --
93.99 0.452 2.99 -- 0.521 0.253 -- -- 0.454 6.11 30.37 458 -- --
105.27 0.479 3 0.152 -- -- -- -- 0.458 -- -- -- -- --
95.19 0.456 3 -- 0.454 -- -- -- 0.432 6.08 -- -- -- --
102.91 0.472 3 -- -- -0.316 -- -- 0.463 -- 24.5 372 -- --
105.88 0.48 3 -- -- -- -- -- 0.441 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 85.27 temperature 25.0 10 > th dose independent rect. 5 2
3 86.28 wind 9.0 4320 < th dose independent rect. 7 1
7 86.43 temperature 20.0 30 > th dose dependent rect. 6 1
11 86.47 temperature 10.0 1440 > th dose independent rect. 7 1
15 86.47 temperature 30.0 1440 < th dose independent rect. 7 1
19 86.47 humidity 50.0 1440 > th dose independent rect. 7 1
24 86.47 atmosphere 995.0 1440 > th dose independent rect. 7 1
25 86.47 atmosphere 1015.0 1440 < th dose independent rect. 7 1
26 86.47 radiation 1.0 30 > th dose independent rect. 6 1
27 86.47 temperature 10.0 1440 > th dose independent rect. 8 23
31 86.48 atmosphere 995.0 30 > th dose independent rect. 7 23
33 86.48 humidity 90.0 10 < th dose dependent rect. 6 1
34 86.49 radiation 30.0 30 < th dose dependent rect. 6 1
35 86.50 humidity 90.0 30 < th dose independent rect. 6 1
36 86.50 atmosphere 1005.0 30 > th dose independent rect. 6 1
39 86.51 wind 1.0 30 > th dose independent rect. 6 1
40 86.52 wind 5.0 30 < th dose independent rect. 6 1
43 86.52 temperature 10.0 30 > th dose independent rect. 6 1
45 86.52 temperature 30.0 30 < th dose independent rect. 6 1
46 86.52 humidity 50.0 30 > th dose independent rect. 6 1
49 86.52 atmosphere 995.0 30 > th dose independent rect. 6 1
51 86.52 atmosphere 1015.0 30 < th dose independent rect. 6 1
52 86.52 radiation 20.0 30 < th dose independent rect. 6 1
55 86.52 precipitation 0.1 30 < th dose independent rect. 6 1
56 86.52 temperature 10.0 30 > th dose independent rect. 7 23
58 86.52 precipitation 0.1 30 < th dose dependent rect. 6 1
63 86.55 precipitation 0.1 30 < th dose independent rect. 7 23
64 86.55 radiation 1.0 10 > th dose dependent rect. 6 1
65 86.55 precipitation 0.1 30 < th dose dependent rect. 7 23
67 86.58 humidity 50.0 30 > th dose dependent rect. 6 1
68 86.58 atmosphere 1015.0 30 < th dose dependent rect. 6 1
70 86.59 wind 9.0 30 < th dose dependent rect. 6 1
77 86.64 temperature 25.0 30 > th dose independent rect. 3 4
79 86.64 atmosphere 995.0 30 > th dose dependent rect. 6 1
82 86.66 wind 9.0 30 < th dose independent rect. 7 23
114 86.82 temperature 20.0 270 > th dose dependent rect. 2 5
117 86.84 wind 1.0 30 > th dose dependent rect. 6 1
128 87.03 temperature 30.0 30 < th dose dependent rect. 6 1
134 87.16 radiation 1.0 30 > th dose dependent rect. 18 13
151 87.32 humidity 50.0 30 > th dose independent rect. 7 23
176 87.67 atmosphere 1005.0 270 > th dose dependent rect. 2 4
215 88.11 humidity 90.0 90 < th dose independent rect. 4 3
235 88.25 wind 1.0 30 > th dose independent rect. 7 23
308 88.65 atmosphere 1015.0 30 < th dose independent rect. 7 23
316 88.75 radiation 40.0 1440 < th dose independent rect. 7 1
347 88.98 temperature 30.0 30 < th dose independent rect. 7 23
377 89.08 atmosphere 1005.0 270 > th dose independent rect. 2 5
537 89.74 humidity 90.0 10 < th dose dependent rect. 4 3
651 90.09 wind 1.0 30 > th dose independent rect. 9 21
661 90.12 atmosphere 1005.0 30 > th dose independent rect. 2 7
674 90.15 wind 1.0 30 < th dose independent rect. 2 1
677 90.15 atmosphere 1005.0 30 > th dose dependent rect. 2 1
694 90.20 radiation 10.0 30 < th dose dependent sin 11 NA
698 90.21 wind 3.0 30 < th dose dependent rect. 2 1
703 90.22 temperature 20.0 30 > th dose dependent rect. 2 1
708 90.24 radiation 1.0 90 > th dose independent sin 11 NA
715 90.25 radiation 1.0 90 < th dose independent sin 11 NA
736 90.28 atmosphere 1005.0 30 > th dose independent rect. 2 1
750 90.31 temperature 20.0 30 > th dose independent rect. 2 1
751 90.31 temperature 25.0 30 < th dose independent rect. 2 1
759 90.32 temperature 30.0 720 > th dose independent rect. 13 1
772 90.35 humidity 80.0 30 > th dose independent rect. 2 1
780 90.36 wind 3.0 10 < th dose independent rect. 6 3
787 90.37 wind 9.0 30 < th dose independent rect. 2 1
788 90.37 temperature 10.0 30 > th dose independent rect. 2 1
791 90.37 humidity 50.0 30 > th dose independent rect. 2 1
795 90.37 atmosphere 1010.0 30 < th dose independent rect. 2 1
797 90.37 radiation 1.0 30 < th dose independent rect. 2 1
802 90.37 precipitation 0.1 30 < th dose independent rect. 2 1
805 90.37 temperature 10.0 30 > th dose independent rect. 3 23
807 90.37 humidity 50.0 30 > th dose dependent rect. 2 1
809 90.37 radiation 1.0 30 < th dose dependent rect. 2 1
814 90.37 precipitation 0.1 30 < th dose dependent rect. 2 1
866 90.48 wind 1.0 30 > th dose independent rect. 20 10
902 90.55 temperature 10.0 30 > th dose dependent rect. 7 23
929 90.60 radiation 1.0 90 < th dose independent rect. 20 14
930 90.60 radiation 1.0 90 < th dose independent rect. 20 16
935 90.61 radiation 1.0 90 < th dose independent rect. 20 12
943 90.63 atmosphere 1015.0 30 < th dose dependent rect. 2 1
945 90.64 temperature 25.0 720 > th dose independent rect. 21 1
978 90.69 temperature 30.0 30 < th dose dependent rect. 2 1