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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0581400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : UspA domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.97 (0.0285) R2 : 0.00764
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.112 (0.06) R2dN8 : 0.00986 R2N8 : 0.00764
σ : 0.537
deviance : 132.35
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
122.52 0.52 2.95 0.0636 0.124 0.305 0.852 1.86 0.155 16.5 1005 6161 -- --
125.45 0.522 2.96 -0.00597 0.127 0.469 0.831 -- 0.169 16.5 1003 6141 -- --
124.29 0.519 2.94 0.0775 0.128 0.286 -- 1.94 0.16 15.2 1005 6169 -- --
126.02 0.523 2.96 -0.0506 0.148 0.454 -- -- 0.163 15.4 1001 11937 -- --
125.35 0.521 2.94 0.0616 -- 0.31 -- 1.83 0.158 -- 1005 6128 -- --
129.56 0.534 2.97 0.044 0.124 -- 0.834 -- 0.116 16.6 -- -- -- --
131.24 0.536 2.97 0.0501 0.136 -- -- -- 0.121 15 -- -- -- --
126.88 0.525 2.96 -0.0525 -- 0.465 -- -- 0.165 -- 1000 12375 -- --
126.01 0.523 2.96 -- 0.129 0.449 -- -- 0.172 15.1 1000 12358 -- --
132.3 0.537 2.97 0.0443 -- -- -- -- 0.117 -- -- -- -- --
131.31 0.536 2.97 -- 0.135 -- -- -- 0.115 15 -- -- -- --
126.95 0.525 2.96 -- -- 0.453 -- -- 0.17 -- 1000 12373 -- --
132.35 0.537 2.97 -- -- -- -- -- 0.112 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 120.82 radiation 20 1440 > th dose independent rect. 6 1
15 121.13 wind 9 4320 < th dose independent rect. 20 7
24 121.38 wind 9 4320 < th dose independent rect. 20 3
31 121.47 wind 9 4320 > th dose dependent rect. 20 4
39 121.49 wind 9 4320 > th dose dependent rect. 20 2
46 121.54 wind 9 4320 > th dose independent rect. 20 1
88 121.73 humidity 90 30 < th dose dependent rect. 3 4
116 121.85 radiation 1 14400 < th dose dependent rect. 24 3
119 121.86 radiation 1 14400 < th dose dependent rect. 22 5
133 121.98 wind 7 1440 < th dose independent rect. 8 1
134 121.99 humidity 80 10 < th dose independent rect. 3 4
141 122.01 humidity 80 270 < th dose independent rect. 2 1
144 122.01 humidity 80 270 < th dose dependent rect. 2 1
148 122.03 wind 7 1440 > th dose independent rect. 8 1
153 122.05 humidity 90 1440 < th dose dependent rect. 3 1
174 122.26 humidity 90 1440 < th dose independent rect. 24 3
176 122.28 atmosphere 995 14400 > th dose independent rect. 18 1
178 122.28 humidity 90 1440 < th dose dependent rect. 24 7
182 122.30 humidity 90 1440 < th dose dependent rect. 2 5
189 122.39 humidity 90 1440 < th dose dependent rect. 5 2
205 122.55 radiation 1 14400 < th dose dependent rect. 19 8
209 122.59 humidity 90 1440 < th dose dependent rect. 24 4
214 122.62 atmosphere 995 14400 < th dose independent rect. 17 1
216 122.62 atmosphere 995 14400 < th dose dependent rect. 17 1
248 122.67 humidity 90 1440 < th dose independent rect. 24 7
249 122.67 wind 7 1440 > th dose independent rect. 1 8
268 122.79 humidity 90 1440 < th dose dependent rect. 24 1
272 122.82 humidity 90 1440 < th dose independent rect. 24 18
277 122.85 humidity 80 1440 > th dose dependent rect. 5 2
325 123.09 humidity 60 1440 > th dose dependent rect. 24 7
334 123.12 humidity 50 1440 > th dose dependent rect. 24 1
344 123.15 atmosphere 1010 14400 < th dose dependent rect. 11 1
349 123.16 wind 5 14400 < th dose independent rect. 14 8
371 123.19 atmosphere 995 14400 > th dose independent rect. 11 8
384 123.19 atmosphere 995 14400 > th dose independent rect. 7 12
397 123.20 wind 5 14400 > th dose independent rect. 14 8
398 123.20 wind 5 14400 > th dose independent rect. 14 10
399 123.20 atmosphere 995 14400 > th dose independent rect. 11 10
401 123.20 atmosphere 995 14400 > th dose independent rect. 7 14
409 123.21 wind 5 1440 > th dose dependent rect. 8 1
460 123.28 wind 3 14400 > th dose dependent rect. 14 7
464 123.29 humidity 50 1440 > th dose dependent rect. 24 4
496 123.33 atmosphere 1005 14400 < th dose independent rect. 7 1
519 123.36 humidity 90 1440 < th dose independent rect. 5 2
526 123.37 atmosphere 1005 14400 > th dose independent rect. 7 2
533 123.38 atmosphere 995 14400 > th dose dependent rect. 11 1
545 123.40 humidity 90 1440 > th dose independent rect. 5 1
623 123.45 atmosphere 995 14400 > th dose independent rect. 9 5
697 123.49 temperature 20 720 < th dose independent rect. 18 2
702 123.49 atmosphere 1000 4320 < th dose dependent rect. 12 1
855 123.60 temperature 20 720 < th dose independent rect. 9 11
877 123.61 atmosphere 1010 14400 < th dose dependent sin 3 NA
992 123.66 wind 5 14400 < th dose independent sin 16 NA