Os01g0580800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0580800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.21 | 0.262 | 10.7 | -0.192 | 1.45 | 0.524 | 0.709 | 0.29 | -0.177 | 6.43 | 56.88 | 5015 | -- | -- |
| 31.23 | 0.26 | 10.7 | -0.213 | 1.46 | 0.608 | 0.742 | -- | -0.18 | 6.42 | 55.7 | 5013 | -- | -- |
| 32.44 | 0.265 | 10.7 | -0.18 | 1.46 | 0.548 | -- | 0.149 | -0.175 | 6.43 | 56.93 | 5016 | -- | -- |
| 32.44 | 0.265 | 10.7 | -0.19 | 1.46 | 0.604 | -- | -- | -0.176 | 6.44 | 56 | 5014 | -- | -- |
| 139.3 | 0.55 | 10.7 | -0.0555 | -- | 0.494 | -- | 0.565 | -0.154 | -- | 67.14 | 5692 | -- | -- |
| 35.79 | 0.28 | 10.7 | -0.0776 | 1.44 | -- | 0.646 | -- | -0.244 | 6.38 | -- | -- | -- | -- |
| 36.83 | 0.284 | 10.7 | -0.0693 | 1.44 | -- | -- | -- | -0.246 | 6.38 | -- | -- | -- | -- |
| 138.64 | 0.548 | 10.7 | -0.134 | -- | 0.517 | -- | -- | -0.177 | -- | 55.59 | 6925 | -- | -- |
| 33.21 | 0.268 | 10.7 | -- | 1.46 | 0.509 | -- | -- | -0.157 | 6.43 | 57.9 | 5014 | -- | -- |
| 144.46 | 0.562 | 10.7 | -0.0319 | -- | -- | -- | -- | -0.215 | -- | -- | -- | -- | -- |
| 36.95 | 0.284 | 10.7 | -- | 1.44 | -- | -- | -- | -0.238 | 6.39 | -- | -- | -- | -- |
| 138.94 | 0.549 | 10.7 | -- | -- | 0.569 | -- | -- | -0.14 | -- | 57.15 | 6956 | -- | -- |
| 144.49 | 0.561 | 10.7 | -- | -- | -- | -- | -- | -0.212 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.10 | wind | 1 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 2 | 30.11 | wind | 1 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 3 | 30.19 | wind | 1 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 6 | 30.54 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 5 |
| 17 | 30.68 | humidity | 60 | 4320 | < th | dose independent | rect. | 9 | 3 |
| 19 | 30.71 | humidity | 60 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 20 | 30.71 | wind | 1 | 14400 | < th | dose dependent | rect. | 1 | 8 |
| 21 | 30.72 | humidity | 60 | 4320 | < th | dose independent | rect. | 19 | 17 |
| 53 | 30.87 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 9 |
| 66 | 30.94 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 9 |
| 71 | 30.96 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 9 |
| 72 | 30.97 | humidity | 60 | 4320 | < th | dose dependent | rect. | 10 | 2 |
| 74 | 30.98 | humidity | 60 | 4320 | > th | dose independent | rect. | 9 | 2 |
| 82 | 30.99 | humidity | 60 | 4320 | > th | dose independent | rect. | 24 | 12 |
| 83 | 30.99 | humidity | 60 | 4320 | > th | dose independent | rect. | 19 | 17 |
| 91 | 31.00 | humidity | 60 | 4320 | > th | dose independent | rect. | 2 | 10 |
| 105 | 31.03 | wind | 1 | 14400 | < th | dose independent | rect. | 24 | 9 |
| 129 | 31.05 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 9 |
| 144 | 31.07 | wind | 1 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 150 | 31.09 | humidity | 60 | 4320 | < th | dose independent | sin | 9 | NA |
| 152 | 31.09 | wind | 1 | 14400 | < th | dose independent | rect. | 22 | 11 |
| 157 | 31.10 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 177 | 31.12 | humidity | 50 | 14400 | > th | dose independent | rect. | 13 | 23 |
| 178 | 31.12 | wind | 1 | 14400 | < th | dose dependent | sin | 7 | NA |
| 191 | 31.14 | humidity | 60 | 4320 | < th | dose dependent | sin | 7 | NA |
| 225 | 31.15 | humidity | 50 | 4320 | > th | dose independent | rect. | 10 | 6 |
| 228 | 31.15 | humidity | 50 | 4320 | > th | dose independent | rect. | 24 | 16 |
| 300 | 31.19 | humidity | 50 | 14400 | > th | dose independent | rect. | 10 | 17 |
| 316 | 31.20 | humidity | 50 | 14400 | > th | dose independent | sin | 20 | NA |
| 318 | 31.20 | humidity | 50 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 391 | 31.20 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 396 | 31.21 | humidity | 50 | 14400 | > th | dose independent | no | NA | NA |
| 398 | 31.21 | humidity | 50 | 14400 | > th | dose independent | rect. | 13 | 4 |
| 490 | 31.22 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 515 | 31.22 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 12 | 5 |
| 521 | 31.23 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 13 | 2 |
| 528 | 31.24 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 14 | 4 |
| 531 | 31.24 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 13 | 7 |
| 547 | 31.24 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 11 | 9 |
| 557 | 31.25 | humidity | 60 | 4320 | > th | dose independent | sin | 9 | NA |
| 571 | 31.26 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 573 | 31.26 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 576 | 31.26 | humidity | 60 | 4320 | < th | dose independent | rect. | 15 | 21 |
| 577 | 31.26 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 23 |
| 726 | 31.32 | wind | 1 | 14400 | > th | dose independent | rect. | 22 | 15 |
| 727 | 31.32 | wind | 1 | 14400 | < th | dose independent | rect. | 22 | 15 |
| 756 | 31.33 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 13 |
| 782 | 31.34 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 797 | 31.34 | wind | 1 | 14400 | < th | dose independent | rect. | 24 | 13 |
| 830 | 31.35 | wind | 1 | 14400 | > th | dose independent | sin | 5 | NA |
| 832 | 31.35 | wind | 1 | 14400 | < th | dose independent | sin | 6 | NA |
| 883 | 31.37 | wind | 1 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 886 | 31.37 | wind | 1 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 908 | 31.39 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 940 | 31.39 | humidity | 50 | 14400 | < th | dose independent | rect. | 16 | 23 |
| 956 | 31.40 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 974 | 31.40 | humidity | 60 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 1000 | 31.41 | humidity | 50 | 14400 | < th | dose independent | rect. | 10 | 8 |