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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0580500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to 1-aminocyclopropane-1-carboxylate oxidase (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.37 (0.0941) R2 : 0.533
β1 : -6.95 (0.381) R2dD : 0.523 R2D : -0.0232
β2 : 1.89 (0.206) R2dC : 0.089 R2C : 0.0773
β3 : 3.49 (0.452) R2dE : 0.093 R2E : -0.142
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 30.9 (2.01) R2dD*E : 0.381 R2D*E : -0.0281
γ1 : -1.46 (0.202) R2dN8 : 0.0879 R2N8 : 0.00409
σ : 1.6
deviance : 1181.7
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_____
C
peak time of C : 0.342
E
wheather : radiation
threshold : 0.9934
memory length : 4327
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18
open length of G : 9.1

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1191.46 1.62 6.36 -7.04 1.99 3.48 -0.0362 30.8 -1.46 0.323 0.99 4325 18 6.22
1618.02 1.87 6.53 -6.27 0.718 3.9 -1.51 -- -0.774 23.3 1.238 41951 18 6.68
1181.7 1.6 6.37 -6.95 1.89 3.49 -- 30.9 -1.46 0.342 0.9934 4327 18 9.1
1430.5 1.76 6.67 -4.51 0.765 4.01 -- -- -1.11 23.1 1.23 41936 18 6.6
1363.2 1.72 6.36 -6.95 -- 4.19 -- 30.8 -1.52 -- 1.007 4336 18 9.14
1810.71 1.99 6.85 -3.84 1.9 -- 1.17 -- -1.56 23.5 -- -- -- --
1816.59 2 6.85 -3.89 1.9 -- -- -- -1.57 23.6 -- -- -- --
1414.68 1.75 6.69 -4.33 -- 4.92 -- -- -1.11 -- 1.23 41977 18 7.3
1613.11 1.87 6.69 -- 0.828 3.87 -- -- -0.329 23.2 0.3691 43443 18 6.93
2042.94 2.11 6.81 -3.83 -- -- -- -- -1.55 -- -- -- -- --
2214.94 2.2 6.76 -- 1.85 -- -- -- -1.14 23.5 -- -- -- --
1628.92 1.88 6.63 -- -- 4.53 -- -- -0.306 -- 0.3711 46328 18.1 6.95
2430.79 2.3 6.71 -- -- -- -- -- -1.12 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1154.08 temperature 30 14400 < th dose independent rect. 11 7
2 1154.96 temperature 30 14400 < th dose independent rect. 11 13
12 1155.08 temperature 30 14400 < th dose independent rect. 11 21
16 1155.50 temperature 30 14400 < th dose independent rect. 11 5
19 1156.17 temperature 30 14400 > th dose independent rect. 11 7
35 1157.29 temperature 30 14400 > th dose dependent rect. 15 1
50 1157.82 temperature 30 14400 > th dose independent rect. 15 3
51 1158.09 temperature 30 14400 < th dose independent rect. 15 3
67 1158.39 temperature 30 14400 < th dose independent sin 15 NA
91 1159.78 temperature 30 14400 > th dose independent sin 15 NA
190 1162.95 temperature 25 14400 > th dose dependent rect. 11 1
224 1165.77 temperature 30 14400 > th dose independent rect. 12 1
228 1165.87 wind 5 43200 < th dose dependent rect. 2 2
230 1166.00 temperature 30 14400 < th dose independent rect. 12 1
246 1166.62 wind 5 43200 > th dose dependent rect. 11 1
264 1168.70 temperature 25 14400 > th dose dependent rect. 11 19
275 1169.35 temperature 25 14400 > th dose dependent rect. 11 5
282 1169.53 humidity 80 43200 > th dose dependent rect. 11 3
454 1174.15 temperature 25 14400 > th dose dependent sin 17 NA
463 1174.41 temperature 25 14400 > th dose dependent rect. 22 18
482 1175.11 temperature 30 14400 < th dose independent rect. 20 22
483 1175.13 temperature 30 14400 < th dose independent rect. 7 11
514 1175.53 temperature 30 14400 < th dose independent rect. 7 17
564 1175.64 temperature 30 14400 < th dose independent no NA NA
643 1176.46 temperature 25 14400 > th dose dependent no NA NA
666 1176.78 temperature 30 14400 < th dose independent rect. 14 23
739 1178.13 temperature 30 14400 < th dose independent rect. 17 23
751 1178.44 temperature 30 14400 > th dose independent no NA NA
913 1179.77 temperature 30 14400 > th dose independent rect. 14 23
923 1179.97 temperature 20 43200 > th dose independent rect. 7 15
928 1180.06 temperature 20 43200 < th dose independent rect. 7 1
929 1180.07 temperature 20 43200 < th dose independent rect. 7 15
985 1181.14 temperature 30 14400 > th dose independent rect. 17 23
987 1181.17 temperature 25 43200 < th dose dependent rect. 10 2
992 1181.29 temperature 25 14400 > th dose dependent rect. 17 11