Os01g0580300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0580300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.03 | 0.345 | 9.03 | -0.575 | 1.18 | -1.32 | 0.181 | -0.574 | 0.0513 | 22.6 | 25.95 | 351 | -- | -- |
| 54.38 | 0.343 | 9.05 | -0.67 | 1.19 | -1.3 | 0.198 | -- | 0.0216 | 22.9 | 27.22 | 341 | -- | -- |
| 54.16 | 0.343 | 9.03 | -0.578 | 1.18 | -1.31 | -- | -0.592 | 0.0534 | 22.6 | 25.84 | 357 | -- | -- |
| 54.52 | 0.344 | 9.05 | -0.687 | 1.18 | -1.29 | -- | -- | 0.021 | 22.8 | 27.06 | 342 | -- | -- |
| 105.86 | 0.479 | 9.04 | -0.86 | -- | -1.93 | -- | -0.253 | -0.0122 | -- | 30.4 | 770 | -- | -- |
| 78.16 | 0.414 | 8.99 | -0.346 | 1.25 | -- | 0.112 | -- | 0.308 | 21.9 | -- | -- | -- | -- |
| 78.21 | 0.414 | 8.99 | -0.351 | 1.25 | -- | -- | -- | 0.308 | 21.9 | -- | -- | -- | -- |
| 105.62 | 0.479 | 9.04 | -0.878 | -- | -1.98 | -- | -- | -0.0747 | -- | 30.1 | 770 | -- | -- |
| 65.51 | 0.377 | 9.02 | -- | 1.18 | -1.01 | -- | -- | 0.147 | 22.5 | 26.12 | 354 | -- | -- |
| 171.75 | 0.612 | 8.95 | -0.337 | -- | -- | -- | -- | 0.308 | -- | -- | -- | -- | -- |
| 81.45 | 0.422 | 8.98 | -- | 1.25 | -- | -- | -- | 0.347 | 21.9 | -- | -- | -- | -- |
| 123.91 | 0.518 | 9.01 | -- | -- | -1.67 | -- | -- | 0.0857 | -- | 30.83 | 744 | -- | -- |
| 174.74 | 0.617 | 8.95 | -- | -- | -- | -- | -- | 0.345 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.84 | temperature | 20.0 | 270 | > th | dose dependent | sin | 8 | NA |
| 3 | 50.96 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 9 | 51.84 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 16 | 18 |
| 24 | 52.48 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 22 | 3 |
| 29 | 52.59 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 31 | 52.60 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 22 | 12 |
| 36 | 52.65 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 17 | 18 |
| 41 | 52.72 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 20 | 13 |
| 65 | 52.90 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 6 | 12 |
| 70 | 52.93 | temperature | 30.0 | 270 | < th | dose dependent | sin | 8 | NA |
| 103 | 53.09 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 121 | 53.18 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 8 | 10 |
| 122 | 53.18 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 4 | 13 |
| 134 | 53.22 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 17 | 12 |
| 159 | 53.29 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 21 | 21 |
| 164 | 53.30 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 22 | 19 |
| 175 | 53.32 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 22 | 9 |
| 190 | 53.36 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 201 | 53.37 | radiation | 1.0 | 14400 | < th | dose dependent | sin | 1 | NA |
| 211 | 53.40 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 18 | 15 |
| 221 | 53.43 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 10 | 21 |
| 223 | 53.44 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 4 | 8 |
| 254 | 53.52 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 309 | 53.59 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 17 | 19 |
| 374 | 53.64 | radiation | 1.0 | 14400 | < th | dose dependent | no | NA | NA |
| 376 | 53.64 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 17 | 16 |
| 410 | 53.67 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 7 |
| 418 | 53.68 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 437 | 53.69 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 16 | 23 |
| 468 | 53.74 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 478 | 53.76 | radiation | 1.0 | 43200 | < th | dose dependent | sin | 12 | NA |
| 504 | 53.77 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 8 | 15 |
| 525 | 53.79 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 526 | 53.79 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 564 | 53.83 | humidity | 90.0 | 43200 | > th | dose dependent | sin | 3 | NA |
| 567 | 53.83 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 22 | 6 |
| 577 | 53.84 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 580 | 53.84 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 4 | 5 |
| 592 | 53.85 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 6 | 11 |
| 639 | 53.88 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 649 | 53.88 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 6 | 11 |
| 650 | 53.88 | temperature | 30.0 | 720 | < th | dose dependent | sin | 11 | NA |
| 697 | 53.91 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 4 | 22 |
| 729 | 53.94 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 8 | 11 |
| 769 | 53.97 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 5 | 21 |
| 873 | 53.99 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 16 | 8 |
| 905 | 54.01 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 6 | 13 |