FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0580200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Beta-galactosidase precursor (EC 3.2.1.23) (Lactase).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.2 (0.0315) R2 : 0.69
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.39 (0.075) R2dC : 0.691 R2C : 0.688
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.104 (0.0662) R2dN8 : 0.00218 R2N8 : -0.00119
σ : 0.594
deviance : 161.01
__
_____
C
peak time of C : 23.4
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
140.6 0.557 4.16 -0.617 2.41 -0.103 -0.816 2.35 -0.131 23.5 3.803 33 -- --
149.08 0.573 4.21 -0.693 2.36 0.168 -0.533 -- -0.169 23.3 3.803 33 -- --
143.3 0.558 4.17 -0.587 2.42 -0.101 -- 2.06 -0.134 23.5 3.766 32 -- --
148.1 0.567 4.24 -0.733 2.38 0.293 -- -- -0.224 23.3 0.07221 85 -- --
479.12 1.03 4.12 -0.747 -- 0.884 -- 1.39 -0.102 -- 2.7 9 -- --
149.59 0.573 4.21 -0.649 2.39 -- -0.478 -- -0.176 23.4 -- -- -- --
150.56 0.575 4.21 -0.63 2.39 -- -- -- -0.174 23.4 -- -- -- --
481.91 1.03 4.15 -0.814 -- 0.907 -- -- -0.146 -- 5.3 4 -- --
158.53 0.586 4.19 -- 2.38 0.507 -- -- -0.0675 23.3 0.3 86 -- --
510.23 1.06 4.15 -0.567 -- -- -- -- -0.15 -- -- -- -- --
161.01 0.594 4.2 -- 2.39 -- -- -- -0.104 23.4 -- -- -- --
498.46 1.04 4.13 -- -- 0.746 -- -- -0.0612 -- 5.3 4 -- --
518.7 1.06 4.14 -- -- -- -- -- -0.0868 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 132.55 humidity 50.0 720 > th dose dependent rect. 19 5
2 132.70 temperature 20.0 90 > th dose independent rect. 3 10
4 132.91 humidity 70.0 720 > th dose independent rect. 19 13
6 133.74 humidity 70.0 720 > th dose independent rect. 19 5
16 134.48 wind 9.0 30 < th dose dependent rect. 22 17
21 134.63 temperature 30.0 720 < th dose independent rect. 18 14
28 135.07 temperature 30.0 720 < th dose independent rect. 18 6
30 135.19 wind 9.0 1440 < th dose independent rect. 24 6
33 135.23 wind 7.0 90 < th dose dependent rect. 21 8
38 135.33 precipitation 0.1 270 < th dose independent rect. 19 19
39 135.33 wind 5.0 30 < th dose dependent rect. 23 8
40 135.33 precipitation 0.1 270 < th dose dependent rect. 19 19
41 135.34 atmosphere 1000.0 270 > th dose independent rect. 19 19
44 135.41 temperature 30.0 270 < th dose independent rect. 19 19
49 135.46 wind 5.0 30 < th dose dependent rect. 23 14
54 135.51 wind 3.0 720 < th dose independent rect. 23 5
56 135.54 atmosphere 1000.0 90 > th dose independent rect. 21 18
59 135.58 wind 5.0 30 < th dose dependent rect. 20 11
65 135.61 wind 9.0 270 < th dose independent rect. 19 19
68 135.64 temperature 10.0 270 > th dose dependent rect. 14 5
69 135.65 temperature 30.0 90 < th dose independent rect. 21 18
73 135.66 wind 9.0 90 < th dose independent rect. 21 18
76 135.68 wind 9.0 90 < th dose independent rect. 13 14
87 135.73 temperature 15.0 90 > th dose independent rect. 13 14
89 135.75 precipitation 0.1 720 < th dose independent rect. 17 9
91 135.75 precipitation 0.1 720 < th dose dependent rect. 17 9
93 135.76 humidity 70.0 720 > th dose dependent rect. 1 4
97 135.78 wind 9.0 270 < th dose dependent rect. 19 19
102 135.80 radiation 10.0 720 < th dose independent rect. 23 6
103 135.80 wind 7.0 720 < th dose independent rect. 20 11
105 135.81 temperature 10.0 720 > th dose independent rect. 11 6
106 135.81 atmosphere 1015.0 720 < th dose independent rect. 11 6
107 135.81 wind 9.0 90 < th dose independent rect. 3 10
108 135.81 temperature 10.0 720 > th dose independent rect. 17 18
110 135.82 temperature 10.0 720 > th dose independent rect. 23 6
111 135.82 temperature 30.0 720 < th dose independent rect. 23 6
112 135.82 humidity 50.0 720 > th dose independent rect. 23 6
115 135.82 atmosphere 995.0 720 > th dose independent rect. 23 6
119 135.82 temperature 10.0 720 > th dose independent rect. 5 18
120 135.82 radiation 40.0 720 < th dose dependent rect. 23 6
123 135.83 radiation 20.0 720 < th dose dependent rect. 23 6
131 135.86 radiation 40.0 90 < th dose independent rect. 15 6
133 135.86 atmosphere 995.0 90 > th dose independent rect. 3 10
134 135.86 atmosphere 1015.0 90 < th dose independent rect. 3 10
140 135.89 temperature 10.0 270 > th dose independent rect. 14 5
142 135.89 atmosphere 995.0 270 > th dose independent rect. 14 5
143 135.89 atmosphere 1010.0 270 < th dose independent rect. 14 5
145 135.89 precipitation 0.1 270 < th dose independent rect. 14 5
147 135.89 precipitation 0.1 90 < th dose independent rect. 21 18
148 135.89 temperature 10.0 270 > th dose independent rect. 19 19
151 135.89 precipitation 0.1 270 < th dose dependent rect. 14 5
152 135.89 precipitation 0.1 90 < th dose dependent rect. 21 18
186 135.91 humidity 50.0 720 > th dose dependent rect. 24 5
187 135.92 wind 1.0 270 > th dose independent rect. 14 5
188 135.92 wind 9.0 270 < th dose independent rect. 14 5
196 135.96 humidity 50.0 720 > th dose dependent rect. 19 12
218 136.02 temperature 10.0 90 > th dose dependent rect. 22 17
225 136.04 temperature 10.0 90 > th dose independent rect. 21 18
230 136.06 wind 9.0 720 < th dose independent rect. 11 6
231 136.06 wind 5.0 90 < th dose independent rect. 21 8
243 136.10 wind 1.0 270 > th dose independent rect. 14 13
256 136.14 wind 1.0 720 > th dose independent rect. 7 5
262 136.16 wind 5.0 270 < th dose independent rect. 19 9
263 136.16 atmosphere 1000.0 10 > th dose independent rect. 22 18
265 136.18 wind 9.0 720 < th dose independent rect. 5 18
268 136.19 radiation 40.0 270 < th dose independent rect. 23 13
277 136.21 wind 9.0 720 < th dose independent rect. 19 13
278 136.22 temperature 30.0 90 < th dose independent rect. 15 6
279 136.22 wind 9.0 10 < th dose independent rect. 22 18
284 136.25 wind 9.0 1440 < th dose independent rect. 22 8
294 136.30 temperature 10.0 720 > th dose independent rect. 17 9
295 136.30 radiation 30.0 720 < th dose independent rect. 17 9
297 136.30 temperature 10.0 720 > th dose independent rect. 2 15
298 136.30 atmosphere 995.0 90 > th dose dependent rect. 15 6
304 136.31 wind 9.0 90 < th dose dependent rect. 17 12
314 136.34 humidity 50.0 90 > th dose independent rect. 15 6
319 136.35 radiation 20.0 270 < th dose independent rect. 19 12
330 136.37 precipitation 0.1 720 < th dose independent rect. 5 9
331 136.37 precipitation 0.1 720 < th dose dependent rect. 5 9
335 136.38 wind 9.0 720 < th dose independent rect. 17 18
336 136.38 wind 9.0 720 < th dose dependent rect. 23 5
341 136.40 radiation 10.0 10 < th dose independent sin 12 NA
342 136.40 atmosphere 1005.0 720 > th dose independent rect. 24 2
347 136.41 humidity 90.0 270 < th dose independent rect. 14 5
348 136.41 radiation 30.0 10 < th dose independent rect. 15 7
355 136.42 radiation 30.0 90 < th dose independent rect. 10 11
357 136.42 humidity 50.0 270 > th dose independent rect. 19 19
363 136.43 atmosphere 1015.0 720 < th dose independent rect. 2 15
369 136.44 temperature 10.0 720 > th dose independent rect. 20 11
370 136.44 temperature 30.0 720 < th dose independent rect. 20 11
371 136.44 humidity 50.0 720 > th dose independent rect. 20 11
373 136.44 atmosphere 995.0 720 > th dose independent rect. 20 11
376 136.44 temperature 10.0 720 > th dose independent rect. 7 13
377 136.44 atmosphere 1015.0 720 < th dose independent rect. 7 13
384 136.45 temperature 10.0 720 > th dose independent rect. 8 11
385 136.45 atmosphere 1015.0 720 < th dose independent rect. 8 11
386 136.45 temperature 10.0 720 > th dose independent rect. 19 13
389 136.45 atmosphere 995.0 720 > th dose independent rect. 19 13
403 136.47 temperature 10.0 10 > th dose dependent rect. 16 6
408 136.48 precipitation 0.1 720 < th dose independent rect. 8 11
413 136.48 precipitation 0.1 720 < th dose dependent rect. 8 11
419 136.49 radiation 40.0 270 < th dose dependent rect. 19 12
422 136.50 precipitation 0.1 270 < th dose independent rect. 19 9
423 136.50 wind 1.0 270 > th dose independent rect. 7 12
427 136.50 precipitation 0.1 270 < th dose dependent rect. 19 9
431 136.51 temperature 20.0 720 > th dose independent rect. 17 2
472 136.58 precipitation 0.1 90 < th dose independent rect. 3 10
473 136.58 radiation 40.0 720 < th dose independent rect. 19 13
476 136.58 precipitation 0.1 90 < th dose dependent rect. 3 10
484 136.60 wind 9.0 720 < th dose dependent rect. 19 5
487 136.61 temperature 10.0 720 > th dose independent rect. 5 9
488 136.61 atmosphere 995.0 720 > th dose independent rect. 5 9
489 136.61 atmosphere 1015.0 720 < th dose independent rect. 5 9
490 136.61 temperature 10.0 720 > th dose independent rect. 14 15
499 136.62 precipitation 0.1 720 < th dose independent rect. 2 15
501 136.62 precipitation 0.1 720 < th dose dependent rect. 2 15
520 136.67 temperature 15.0 270 > th dose independent rect. 12 11
525 136.68 wind 7.0 720 < th dose independent rect. 19 5
529 136.68 humidity 50.0 270 > th dose dependent rect. 19 9
532 136.69 precipitation 0.1 270 < th dose independent rect. 19 12
534 136.69 precipitation 0.1 270 < th dose dependent rect. 19 12
536 136.70 humidity 80.0 10 > th dose independent rect. 23 8
537 136.70 atmosphere 1005.0 90 > th dose independent rect. 3 9
538 136.70 wind 3.0 30 < th dose independent rect. 22 17
546 136.71 radiation 1.0 270 > th dose independent rect. 15 14
557 136.73 humidity 90.0 270 < th dose independent rect. 15 3
568 136.75 radiation 1.0 270 > th dose independent rect. 15 4
571 136.75 temperature 10.0 10 > th dose independent rect. 16 6
573 136.75 atmosphere 995.0 10 > th dose independent rect. 16 6
574 136.75 atmosphere 1010.0 10 < th dose independent rect. 16 6
580 136.75 temperature 10.0 1440 > th dose independent rect. 21 9
583 136.75 temperature 30.0 1440 < th dose independent rect. 21 9
587 136.75 humidity 50.0 1440 > th dose independent rect. 21 9
593 136.75 atmosphere 995.0 1440 > th dose independent rect. 21 9
595 136.75 radiation 20.0 1440 < th dose independent rect. 21 9
608 136.75 wind 7.0 270 < th dose independent rect. 23 13
610 136.75 temperature 10.0 1440 > th dose independent rect. 6 15
613 136.75 temperature 10.0 10 > th dose independent rect. 22 18
617 136.76 wind 3.0 30 < th dose independent rect. 23 8
630 136.78 humidity 50.0 10 > th dose independent rect. 16 6
658 136.80 wind 3.0 720 < th dose independent rect. 1 2
660 136.80 precipitation 0.1 10 < th dose independent rect. 16 6
663 136.80 temperature 15.0 270 > th dose independent rect. 23 13
665 136.80 precipitation 0.1 10 < th dose dependent rect. 16 6
687 136.83 humidity 70.0 270 > th dose independent rect. 19 9
728 136.87 precipitation 0.1 720 < th dose independent rect. 2 6
739 136.87 precipitation 0.1 10 < th dose independent rect. 22 18
740 136.87 precipitation 0.1 720 < th dose dependent rect. 2 6
742 136.87 precipitation 0.1 10 < th dose dependent rect. 22 18
748 136.88 wind 5.0 30 < th dose dependent sin 10 NA
752 136.89 temperature 10.0 720 > th dose independent rect. 19 5
755 136.89 atmosphere 995.0 720 > th dose independent rect. 19 5
756 136.89 radiation 1.0 720 < th dose independent rect. 19 5
765 136.89 temperature 10.0 720 > th dose independent rect. 24 19
766 136.89 radiation 1.0 720 < th dose dependent rect. 19 5
773 136.90 temperature 10.0 1440 > th dose independent rect. 16 7
778 136.90 temperature 10.0 1440 > th dose independent rect. 23 17
781 136.90 atmosphere 995.0 270 > th dose dependent rect. 15 3
787 136.91 wind 9.0 270 < th dose independent rect. 12 11
790 136.91 atmosphere 1015.0 90 < th dose independent rect. 13 14
798 136.92 temperature 10.0 720 > th dose independent rect. 7 5
799 136.92 atmosphere 995.0 720 > th dose independent rect. 7 5
800 136.92 atmosphere 1015.0 720 < th dose independent rect. 7 5
808 136.92 temperature 10.0 720 > th dose independent rect. 12 19
811 136.92 radiation 1.0 270 < th dose dependent sin 14 NA
825 136.95 wind 5.0 720 < th dose independent rect. 19 2
827 136.95 humidity 70.0 720 > th dose independent rect. 2 6
831 136.95 temperature 10.0 270 > th dose independent rect. 19 9
832 136.95 temperature 30.0 270 < th dose independent rect. 19 9
834 136.95 atmosphere 995.0 270 > th dose independent rect. 19 9
835 136.95 radiation 1.0 270 < th dose independent rect. 19 9
840 136.95 temperature 10.0 270 > th dose independent rect. 4 15
841 136.95 atmosphere 1015.0 270 < th dose independent rect. 4 15
846 136.95 radiation 1.0 270 < th dose dependent rect. 19 9
855 136.96 atmosphere 1015.0 270 < th dose dependent rect. 14 5
856 136.96 temperature 10.0 30 > th dose dependent rect. 23 8
864 136.98 radiation 1.0 270 < th dose independent sin 14 NA
876 136.99 atmosphere 1015.0 270 < th dose independent rect. 12 11
878 136.99 atmosphere 995.0 270 > th dose independent rect. 23 13
909 137.00 atmosphere 995.0 10 > th dose dependent rect. 15 7
910 137.00 radiation 40.0 10 < th dose dependent rect. 15 7
935 137.03 temperature 30.0 10 < th dose independent rect. 16 6
946 137.04 atmosphere 995.0 270 > th dose independent rect. 4 15
960 137.07 precipitation 0.1 720 < th dose independent rect. 7 5
967 137.07 precipitation 0.1 720 < th dose dependent rect. 7 5
987 137.08 temperature 10.0 90 > th dose dependent rect. 3 10
992 137.08 radiation 1.0 90 < th dose dependent rect. 21 19