Os01g0579000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0579000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.42 | 0.302 | 2.72 | 2.04 | 0.0841 | -24.4 | -0.0937 | 149 | -0.0363 | 10.5 | 994.7 | 734 | -- | -- |
| 730.11 | 1.26 | 3.13 | 0.479 | 0.526 | -17.7 | 5.38 | -- | -0.206 | 20.3 | 994.6 | 329 | -- | -- |
| 41.46 | 0.3 | 2.72 | 2.04 | 0.0851 | -24.4 | -- | 149 | -0.0365 | 10.3 | 994.7 | 734 | -- | -- |
| 44.13 | 0.311 | 3.04 | 0.0929 | 0.0824 | 0.338 | -- | -- | -0.0354 | 9.22 | 998.7 | 71 | -- | -- |
| 41.9 | 0.301 | 2.72 | 2.06 | -- | -24.7 | -- | 151 | -0.0373 | -- | 994.5 | 770 | -- | -- |
| 44.82 | 0.314 | 3.04 | 0.117 | 0.0793 | -- | -0.103 | -- | -0.0425 | 9.82 | -- | -- | -- | -- |
| 44.86 | 0.314 | 3.04 | 0.112 | 0.0813 | -- | -- | -- | -0.0429 | 9.34 | -- | -- | -- | -- |
| 44.51 | 0.311 | 3.04 | 0.0937 | -- | 0.351 | -- | -- | -0.0354 | -- | 998.5 | 148 | -- | -- |
| 44.33 | 0.31 | 3.04 | -- | 0.0859 | 0.371 | -- | -- | -0.0479 | 9.15 | 998.5 | 148 | -- | -- |
| 45.24 | 0.314 | 3.05 | 0.112 | -- | -- | -- | -- | -0.0426 | -- | -- | -- | -- | -- |
| 45.19 | 0.314 | 3.05 | -- | 0.0812 | -- | -- | -- | -0.0554 | 9.24 | -- | -- | -- | -- |
| 44.73 | 0.313 | 3.05 | -- | -- | 0.357 | -- | -- | -0.0445 | -- | 998.8 | 148 | -- | -- |
| 45.57 | 0.315 | 3.05 | -- | -- | -- | -- | -- | -0.055 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.04 | wind | 9.0 | 4320 | > th | dose independent | rect. | 3 | 1 |
| 33 | 37.04 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 65 | 37.30 | wind | 1.0 | 720 | < th | dose dependent | rect. | 17 | 1 |
| 66 | 37.31 | wind | 1.0 | 270 | < th | dose independent | rect. | 19 | 1 |
| 69 | 37.31 | wind | 1.0 | 270 | < th | dose dependent | rect. | 19 | 1 |
| 71 | 37.39 | wind | 1.0 | 720 | < th | dose independent | rect. | 17 | 1 |
| 73 | 37.42 | wind | 1.0 | 720 | < th | dose dependent | rect. | 16 | 4 |
| 85 | 37.81 | wind | 1.0 | 4320 | < th | dose dependent | rect. | 16 | 1 |
| 101 | 38.45 | wind | 1.0 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 103 | 38.67 | wind | 1.0 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 106 | 38.80 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 2 | 1 |
| 108 | 38.80 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 2 | 2 |
| 112 | 38.80 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 2 | 1 |
| 113 | 38.80 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 2 | 2 |
| 125 | 38.81 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 3 | 1 |
| 136 | 38.84 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 2 | 3 |
| 147 | 38.89 | wind | 1.0 | 4320 | < th | dose dependent | rect. | 14 | 7 |
| 154 | 39.05 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 4 | 3 |
| 158 | 39.08 | wind | 9.0 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 168 | 39.20 | temperature | 25.0 | 90 | > th | dose independent | rect. | 3 | 1 |
| 174 | 39.25 | temperature | 25.0 | 10 | > th | dose independent | rect. | 2 | 2 |
| 192 | 39.36 | wind | 9.0 | 43200 | < th | dose independent | rect. | 3 | 5 |
| 194 | 39.39 | wind | 9.0 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 204 | 39.52 | wind | 1.0 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 225 | 39.63 | wind | 1.0 | 4320 | < th | dose independent | rect. | 14 | 7 |
| 227 | 39.64 | wind | 1.0 | 4320 | > th | dose independent | rect. | 14 | 4 |
| 240 | 39.76 | wind | 1.0 | 720 | < th | dose independent | rect. | 14 | 6 |
| 255 | 39.87 | wind | 5.0 | 4320 | < th | dose independent | rect. | 4 | 1 |
| 267 | 39.95 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 3 | 5 |
| 269 | 39.96 | wind | 5.0 | 4320 | > th | dose independent | rect. | 2 | 4 |
| 270 | 39.96 | wind | 5.0 | 4320 | < th | dose independent | rect. | 2 | 4 |
| 297 | 40.04 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 21 | 9 |
| 305 | 40.05 | wind | 9.0 | 4320 | > th | dose independent | rect. | 21 | 11 |
| 309 | 40.05 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 22 | 7 |
| 322 | 40.06 | wind | 9.0 | 4320 | > th | dose independent | rect. | 21 | 9 |
| 343 | 40.07 | wind | 9.0 | 4320 | > th | dose independent | rect. | 23 | 7 |
| 398 | 40.10 | wind | 9.0 | 4320 | < th | dose independent | rect. | 3 | 6 |
| 400 | 40.10 | wind | 1.0 | 4320 | > th | dose independent | rect. | 14 | 7 |
| 544 | 40.21 | wind | 7.0 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 553 | 40.22 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 562 | 40.22 | wind | 7.0 | 4320 | < th | dose independent | rect. | 22 | 10 |
| 722 | 40.35 | wind | 1.0 | 4320 | > th | dose independent | rect. | 14 | 9 |
| 745 | 40.37 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 762 | 40.38 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 11 | 1 |
| 813 | 40.43 | humidity | 90.0 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 853 | 40.46 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 855 | 40.47 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 864 | 40.47 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 872 | 40.48 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 894 | 40.51 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 905 | 40.52 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 915 | 40.54 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 918 | 40.54 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 11 | 1 |